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SourceForge net custom perl script
Custom Perl Script, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/custom+perl+scripts/custom+perl+script/pmc08931406-78-13-22
Average 90 stars, based on 1 article reviews

custom perl script - by Bioz Stars, 2026-09

90/100 stars

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Sequencing:

Article Title: AFSM sequencing approach: a simple and rapid method for genome-wide SNP and methylation site discovery and genetic mapping
Article Snippet: Then paired-end sequencing was performed in one lane using an Illumina HiSeq 2500 (Illumina Inc., San Diego, CA) by Shanghai South Gene Technology Co., Ltd. .. Raw Illumina sequence reads were processed using custom Perl scripts ( http://afsmseq.sourceforge.net/ ) to optimise read numbers and reduce artefacts within the data. ..

Article Title: The similarity of class II HLA genotypes defines patterns of autoreactivity in idiopathic bone marrow failure disorders.
Article Snippet: .. HED scores were computed for all the subjects and genotypes in the study using the algorithm published by Pierini and Lenz, applying a customized Perl script (https://sourceforge.net/projects/ granthamdist/) for the calculation of the amino acid sequence divergence at the antigen binding sites of HLA molecules.7,40 Briefly, starting from a dictionary including all the protein sequences of exons 2 and 3 for class I alleles and exon 2 for class II alleles, assembled from the IPD-IMGT/HLA database v.3.40,44 we calculated HED for 6 class I (A, B, C) and II HLA loci (DRB1, DQB1, DPB1). ..

Binding Assay:

other:

Article Title: Class I/Class II HLA Evolutionary Divergence Ratio Is an Independent Marker Associated With Disease-Free and Overall Survival After Allogeneic Hematopoietic Stem Cell Transplantation for Acute Myeloid Leukemia
Article Snippet: Divergences between each allele represented by the Grantham distance were calculated using a custom Perl script published by Dr. Tobias Lenz ( https://sourceforge.net/projects/granthamdist/files/ ) ( ).

Article Title: Complete mtDNA genomes of Filipino ethnolinguistic groups: a melting pot of recent and ancient lineages in the Asia-Pacific region
Article Snippet: Aligned, complete mtDNA sequences were assigned haplogroups using a custom Perl script (available from the DREEP website: http://dmcrop.sourceforge.net ) that combines the MUSCLE v3.8 25 , 26 with mtDNAble v1.1.0.0 28 ( http://www.mtdnacommunity.org ).