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bbmap  (SourceForge net)

 
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    SourceForge net bbmap
    Bbmap, supplied by SourceForge net, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/bbmap+suite+of+tools/bbmap/pm37560917-55-47-49
    Average 90 stars, based on 1 article reviews
    bbmap - by Bioz Stars, 2026-10
    90/100 stars

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    Related Articles

    other:

    Article Title:
    Article Snippet: Bushnell,B. (2014) BBMap. https://sourceforge.net/projects/bbmap/.

    Article Title: Activity-targeted metaproteomics enhances the ecophysiological characterization of cryptic syntrophic metabolisms
    Article Snippet: The concentration of all DNA extracts was determined using the Qubit dsDNA BR Assay Kit on a Qubit 4 Fluorometer (Life Technologies, USA), while purity was assessed on a Nanodrop 2000 (Thermo Scientific, USA).

    Article Title:
    Article Snippet: SourceForge https://sourceforge.net/projects/bbmap/ (2022).

    Article Title: Metagenomic and Transcriptomic Datasets of Plateau Brown Frogs ( Rana kukunoris ) from the Helan Mountains
    Article Snippet: BBMap , V38.98 , https://sourceforge.net/projects/bbmap/.

    Article Title:
    Article Snippet: Bushnell B. BBMap. https://sourceforge.net/projects/bbmap 545 21.

    Article Title: Nitrogen and phosphorus differentially control marine biomass production and stoichiometry
    Article Snippet: Metatranscriptomic mapping pipeline is described in Harke et al. . Pre-processing and trimming of selected reads were done with FastQC (v 0.11.9) , Trimmomatic (v 0.3.9) , and bbmap (v 39.01) ( https://sourceforge.net/projects/bbmap/ ) to remove ERCC standards using the bbduk function.

    Article Title: Nitrogen and phosphorus differentially control marine biomass production and stoichiometry.
    Article Snippet: Pre-processing and trimming of selected reads were done with FastQC (v 0.11.9)87, Trimmomatic (v 0.3.9)88, and bbmap (v 39.01) (https://sourceforge.net/projects/bbmap/) to remove ERCC standards using the bbduk function.

    Article Title: Identification of key steps in the evolution of anaerobic methanotrophy in Candidatus Methanovorans (ANME-3) archaea.
    Article Snippet: In this pipeline, the original reads were mapped to the bin of interest using bbmap (https://sourceforge.net/projects/bbmap/), then the mapped reads were assembled using SPAdes, and last, the resulting assembly was filtered, discarding contigs below 1500 bp.



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