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InforMax Inc vnti alignx multiple alignment program
Vnti Alignx Multiple Alignment Program, supplied by InforMax Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/aligner+program/vnti+alignx+multiple+alignment+program/us08853492-327-53-65
Average 90 stars, based on 1 article reviews
vnti alignx multiple alignment program - by Bioz Stars, 2026-09
90/100 stars

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Modification:

Article Title: Plants having increased yield and method for making the same
Article Snippet: .. FIG. 2 shows a multiple alignment of several type I DnaJ-like proteins from the Table 1, using VNTI AlignX multiple alignment program, based on a modified ClustalW algorithm (InforMax, Bethesda, Md.), with default settings for gap opening penalty of 10 and a gap extension of 0.05). ..

Article Title: Plants having improved growth characteristics and a method for making the same
Article Snippet: The software for performing BLAST analysis is publicly available through the National Centre for Biotechnology Information. .. A shaggy-like kinase or a homologue thereof having at least 77% identity to the amino acid represented by SEQ ID NO: 147 may readily be identified by aligning a query amino acid sequence with known Group I shaggy-like kinase sequences (see for example the alignment shown in FIG. 14) using, for example, the VNTI AlignX multiple alignment program, based on a modified clustal W algorithm (InforMax, Bethesda, Md., at informaxinc.com), with default settings for gap opening penalty of 10 and a gap extension of 0.05. ..

Article Title: Method for increasing seed yield or biomass by expressing RNA binding proteins in transgenic plants
Article Snippet: The software for performing BLAST analysis is publicly available through the National Centre for Biotechnology Information. .. An RNA-binding protein or a homologue thereof having at least 13% identity to the amino acid represented by SEQ ID NO: 2 may readily be identified by aligning a query sequence (preferably a protein sequence) with known RNA-binding protein sequences (see for example the alignment shown in FIG. 1) using, for example, the VNTI AlignX multiple alignment program, based on a modified clustal W algorithm (InforMax, Bethesda, MD, informaxinc.com), with default settings for gap opening penalty of 10 and a gap extension of 0.05. ..

Article Title: Plants having increased yield and method for making the same
Article Snippet: The software for performing BLAST analysis is publicly available through the National Centre for Biotechnology Information. .. Homologues of type I DnaJ-like polypeptides and their percentage of identity to the type I DnaJ-like amino acid sequence useful in methods of the invention, as represented by SEQ ID NO: 2, may readily be identified using, for example, the VNTI AlignX multiple alignment program, based on a modified ClustalW algorithm (InforMax, Bethesda, Md., with default settings for gap opening penalty and gap extension. ..

Article Title: Plants having improved growth characteristics and method for making the same
Article Snippet: .. The query sequence may be aligned (with known YIPPEE-like sequences) using, for example, the VNTI AlignX multiple alignment program, based on a modified clustal W algorithm (InforMax, Bethesda, Md.), with default settings for gap opening penalty of 10 and a gap extension of 0.05. ..

Sequencing:

Article Title: Plants having improved growth characteristics and a method for making the same
Article Snippet: The software for performing BLAST analysis is publicly available through the National Centre for Biotechnology Information. .. A shaggy-like kinase or a homologue thereof having at least 77% identity to the amino acid represented by SEQ ID NO: 147 may readily be identified by aligning a query amino acid sequence with known Group I shaggy-like kinase sequences (see for example the alignment shown in FIG. 14) using, for example, the VNTI AlignX multiple alignment program, based on a modified clustal W algorithm (InforMax, Bethesda, Md., at informaxinc.com), with default settings for gap opening penalty of 10 and a gap extension of 0.05. ..

Article Title: Method for increasing seed yield or biomass by expressing RNA binding proteins in transgenic plants
Article Snippet: The software for performing BLAST analysis is publicly available through the National Centre for Biotechnology Information. .. An RNA-binding protein or a homologue thereof having at least 13% identity to the amino acid represented by SEQ ID NO: 2 may readily be identified by aligning a query sequence (preferably a protein sequence) with known RNA-binding protein sequences (see for example the alignment shown in FIG. 1) using, for example, the VNTI AlignX multiple alignment program, based on a modified clustal W algorithm (InforMax, Bethesda, MD, informaxinc.com), with default settings for gap opening penalty of 10 and a gap extension of 0.05. ..

Article Title: Plants having increased yield and method for making the same
Article Snippet: The software for performing BLAST analysis is publicly available through the National Centre for Biotechnology Information. .. Homologues of type I DnaJ-like polypeptides and their percentage of identity to the type I DnaJ-like amino acid sequence useful in methods of the invention, as represented by SEQ ID NO: 2, may readily be identified using, for example, the VNTI AlignX multiple alignment program, based on a modified ClustalW algorithm (InforMax, Bethesda, Md., with default settings for gap opening penalty and gap extension. ..

Article Title: Robust antiviral activity of R1626, a novel nucleoside analog: a randomized, placebo-controlled study in patients with chronic hepatitis C.
Article Snippet: .. Sequencing reactions were performed using an ABI 3730 xl DNA Analyzer and chromatograms analyzed using Sequencher (Gene Codes Corporation, Ann Arbor, MI) and VNTI (InforMax Inc., MD). ..

Article Title: Plants having improved growth characteristics and method for making the same
Article Snippet: .. The query sequence may be aligned (with known YIPPEE-like sequences) using, for example, the VNTI AlignX multiple alignment program, based on a modified clustal W algorithm (InforMax, Bethesda, Md.), with default settings for gap opening penalty of 10 and a gap extension of 0.05. ..

Activity Assay:

Article Title: R1626 plus peginterferon Alfa-2a provides potent suppression of hepatitis C virus RNA and significant antiviral synergy in combination with ribavirin.
Article Snippet: .. The entire region of the HCV genome encoding NS5B protein, the target of R1479 inhibitory activity, was sequenced using an ABI 3730 xl DNA Analyzer and chromatograms analyzed using Sequencher (Gene Codes Corp., Ann Arbor, MI) and VNTI (InforMax Inc., Rockville, MD). ..

Software:

Article Title: Estrogenic effects of natural and synthetic compounds including tibolone assessed in Saccharomyces cerevisiae expressing the human estrogen alpha and beta receptors.
Article Snippet: The human estrogen receptors (hER) and hER , differentially expressed and localized in various tissues and cell types, mediate transcriptional activation of target genes.. These encode a variety of physiological reproductive and nonreproductive functions involved in energy metabolism, salt balance, immune system, development, and differentiation.. As a step toward developing a screening assay for the use in applications where significant numbers of compounds or complex matrices need to be tested for (anti) estrogenic bioactivity, hER and hER were expressed in a genetically modified Saccharomyces cerevisiae strain, devoid of three endogenous xenobiotic transporters (PDR5, SNQ2, and YOR1).



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