space ranger v3 Search Results


space ranger  (10X Genomics)
86
10X Genomics space ranger
Space Ranger, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/space+ranger+v3/bio_rxiv__64898__2026__03__29__714649-241-16-19?v=10X+Genomics
Average 86 stars, based on 1 article reviews
space ranger - by Bioz Stars, 2026-08
86/100 stars
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visium hd mouse brain dataset  (10X Genomics)
86
10X Genomics visium hd mouse brain dataset
(a) sST: <t>Visium</t> <t>HD</t> mouse brain, grid expression over H&E. (b) iST: Xenium human breast cancer; DAPI/IF morphology (left) and cluster-colored centroids (right). (c) SP: CODEX human intestine with protein-defined clusters. (d) scRNA-seq: honey bee brain, 3D UMAP. (e, f) Lasso-defined inner (e) and large (f) Kenyon cell (KC) ROIs (left); linked embedding confirms molecular coherence (right). (g) Differential expression between inner and large KCs (left: Dop3 -colored spatial view; right: DEG heatmap). (h) Spatially varying gene CHIT1 expression: whole tissue (left), ROI1 (middle), ROI2 (right). (i) Same layout as h, CD83 . (j) Spatially resolved ROI1 cell-type clusters (left) and TAMs (cluster 11) sub-clusters (right). (k) Spatially resolved ROI2 cell-type clusters. (l) Cell type composition of ROI1 and ROI2. (m) Volcano of ROI1-core-specific TAMs (11.1) vs other TAMs (11.0 and 11.2).
Visium Hd Mouse Brain Dataset, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/space+ranger+v3/bio_rxiv__64898__2026__05__01__722104-203-1-14?v=10X+Genomics
Average 86 stars, based on 1 article reviews
visium hd mouse brain dataset - by Bioz Stars, 2026-08
86/100 stars
  Buy from Supplier
space ranger v3 1 1  (Spatial Transcriptomics Inc)
86
Spatial Transcriptomics Inc space ranger v3 1 1
(a) sST: <t>Visium</t> <t>HD</t> mouse brain, grid expression over H&E. (b) iST: Xenium human breast cancer; DAPI/IF morphology (left) and cluster-colored centroids (right). (c) SP: CODEX human intestine with protein-defined clusters. (d) scRNA-seq: honey bee brain, 3D UMAP. (e, f) Lasso-defined inner (e) and large (f) Kenyon cell (KC) ROIs (left); linked embedding confirms molecular coherence (right). (g) Differential expression between inner and large KCs (left: Dop3 -colored spatial view; right: DEG heatmap). (h) Spatially varying gene CHIT1 expression: whole tissue (left), ROI1 (middle), ROI2 (right). (i) Same layout as h, CD83 . (j) Spatially resolved ROI1 cell-type clusters (left) and TAMs (cluster 11) sub-clusters (right). (k) Spatially resolved ROI2 cell-type clusters. (l) Cell type composition of ROI1 and ROI2. (m) Volcano of ROI1-core-specific TAMs (11.1) vs other TAMs (11.0 and 11.2).
Space Ranger V3 1 1, supplied by Spatial Transcriptomics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/space+ranger+v3/pm41411657-114-11-0?v=Spatial+Transcriptomics+Inc
Average 86 stars, based on 1 article reviews
space ranger v3 1 1 - by Bioz Stars, 2026-08
86/100 stars
  Buy from Supplier

Image Search Results


(a) sST: Visium HD mouse brain, grid expression over H&E. (b) iST: Xenium human breast cancer; DAPI/IF morphology (left) and cluster-colored centroids (right). (c) SP: CODEX human intestine with protein-defined clusters. (d) scRNA-seq: honey bee brain, 3D UMAP. (e, f) Lasso-defined inner (e) and large (f) Kenyon cell (KC) ROIs (left); linked embedding confirms molecular coherence (right). (g) Differential expression between inner and large KCs (left: Dop3 -colored spatial view; right: DEG heatmap). (h) Spatially varying gene CHIT1 expression: whole tissue (left), ROI1 (middle), ROI2 (right). (i) Same layout as h, CD83 . (j) Spatially resolved ROI1 cell-type clusters (left) and TAMs (cluster 11) sub-clusters (right). (k) Spatially resolved ROI2 cell-type clusters. (l) Cell type composition of ROI1 and ROI2. (m) Volcano of ROI1-core-specific TAMs (11.1) vs other TAMs (11.0 and 11.2).

Journal: bioRxiv

Article Title: MilliMap: interactive closed-loop analysis for spatial omics

doi: 10.64898/2026.05.01.722104

Figure Lengend Snippet: (a) sST: Visium HD mouse brain, grid expression over H&E. (b) iST: Xenium human breast cancer; DAPI/IF morphology (left) and cluster-colored centroids (right). (c) SP: CODEX human intestine with protein-defined clusters. (d) scRNA-seq: honey bee brain, 3D UMAP. (e, f) Lasso-defined inner (e) and large (f) Kenyon cell (KC) ROIs (left); linked embedding confirms molecular coherence (right). (g) Differential expression between inner and large KCs (left: Dop3 -colored spatial view; right: DEG heatmap). (h) Spatially varying gene CHIT1 expression: whole tissue (left), ROI1 (middle), ROI2 (right). (i) Same layout as h, CD83 . (j) Spatially resolved ROI1 cell-type clusters (left) and TAMs (cluster 11) sub-clusters (right). (k) Spatially resolved ROI2 cell-type clusters. (l) Cell type composition of ROI1 and ROI2. (m) Volcano of ROI1-core-specific TAMs (11.1) vs other TAMs (11.0 and 11.2).

Article Snippet: The Visium HD Mouse Brain dataset (FFPE; C57BL/6; Space Ranger v3.0.0) is available from 10x Genomics at https://www.10xgenomics.com/datasets/visium-hd-cytassist-gene-expression-libraries-of-mouse-brain-he , licensed under CC BY 4.0.

Techniques: Expressing, Quantitative Proteomics