Journal: International Journal of Molecular Medicine

Article Title: Microarray analysis of circular RNA expression patterns in polarized macrophages

doi: 10.3892/ijmm.2017.2852

Figure Lengend Snippet: A snippet of the detailed annotation for circRNA-010231/miRNA interaction. The circRNA/miRNA interaction was predicted with Arraystar's home-made miRNA target prediction software based on TargetScan and miRanda, and the most differentially expressed circRNAs within all the comparisons were annotated in detail with the circRNA/miRNA interaction information. Binding sites of conserved miRNAs with good mirSVR scores are represented.

Article Snippet: To further facilitate the implication of our research study, we used the Arraystar's home-made miRNA target prediction software based on TargetScan ( ) and miRanda ( ) to predict circRNA/microRNA interaction.

Techniques: Software, Binding Assay

Journal: RNA Biology

Article Title: Circular RNA Vav3 sponges gga-miR-375 to promote epithelial-mesenchymal transition

doi: 10.1080/15476286.2018.1564462

Figure Lengend Snippet: The binding scores of the top five predicted miRNAs for the 25 upregulated and differentially expressed circRNAs in ALV-J-induced tumor livers.

Article Snippet: Microarray analysis of our previous study were used [ 38 ], the potential miRNA response elements (MREs) for the 25 differentially expressed circRNAs were identified using customized Arraystar miRNA target prediction software based on the miRanda and TargetScan algorithms [ 39 , 40 ].

Techniques: Binding Assay

Journal: Oncotarget

Article Title: Screening circular RNA expression patterns following focal cerebral ischemia in mice

doi: 10.18632/oncotarget.21238

Figure Lengend Snippet: The vertical axis represents the miRNA targeting pathways associated with the circRNAs, and the horizontal axis represents the –LgP pathway values. LgP was the logarithm of p-value, and p < 0.05 was considered significant.

Article Snippet: We then predicted the potential interactions between circRNAs and their target miRNAs using the Arraystar software for miRNA targets, according to the TargetScan and miRanda databases.

Techniques:

Journal: Oncotarget

Article Title: Screening circular RNA expression patterns following focal cerebral ischemia in mice

doi: 10.18632/oncotarget.21238

Figure Lengend Snippet: The network consists of the 3 circRNAs, mmu_circRNA_40001, mmu_circRNA_013120, and mmu_circRNA_40806; (green nodes), miRNAs (red) and their target genes (yellow).

Article Snippet: We then predicted the potential interactions between circRNAs and their target miRNAs using the Arraystar software for miRNA targets, according to the TargetScan and miRanda databases.

Techniques:

Journal: Molecular Medicine Reports

Article Title: Expression and clinical significance of circular RNA hsa_circ_0079787 in the peripheral blood of patients with axial spondyloarthritis

doi: 10.3892/mmr.2020.11520

Figure Lengend Snippet: Snippet of the detailed annotation for circRNA/miRNA interactions. Interactions of hsa_circ_0079787/hsa-miR-580-3p, hsa_circ_0079787/hsa-miR-125b-5p, hsa_circ_0079787/hsa-miR-5191, hsa_circ_0079787/hsa-miR-6830-5p and hsa_circ_0079787/hsa-miR-4694-3p are displayed. UTR, untranslated region; miRNA/miR, microRNA; circRNA/circ, circular RNA; hsa, Homo sapiens ; M, circRNA/miRNA interaction target from Arraystar's home-made miRNA target prediction software based on miRanda; T, circRNA/miRNA interaction target from Arraystar's home-made miRNA target prediction software based on TargetScan.

Article Snippet: The circRNA/miRNA interactions were predicted using Arraystar's home-made miRNA target prediction software (version 1; KangChen Bio-tech, Inc.) ( , ) based on TargetScan (version 6) ( ) and miRanda (version 3.3a) , and the differentially expressed circRNAs within all the comparisons were annotated in detail with the circRNA/miRNA interaction information.

Techniques: Software

Journal: Oncotarget

Article Title: Circular RNA alterations are involved in resistance to avian leukosis virus subgroup-J-induced tumor formation in chickens

doi: 10.18632/oncotarget.16442

Figure Lengend Snippet: Yellow represents circRNAs, green represents miRNAs and pink represents miRNA target genes.

Article Snippet: CircRNA and miRNA interactions were predicted using customized Arraystar miRNA target prediction software based on TargetScan and miRanda [ , ]; the top five putative target miRNAs were identified for upregulated circRNAs in ALV-J-resistant chickens.

Techniques: