software (version r 4.0.2 Search Results


gsea software version 4.0.2  (Broad Institute Inc)
90
Broad Institute Inc gsea software version 4.0.2
(A) Principal component analysis showing principal component 1 (PC1) and PC2 for RNA-seq data from the peripheral blood of CL patients (yellow triangles, n = 51) and HS (blue circles, n = 14). A PERMANOVA statistical test was used to calculate distances between the groups, Pr(>F) = .006. (B) Gene set enrichment analysis <t>(GSEA)</t> showing normalized enrichment scores (NES) of the top 10 pathways from the Reactome Pathway Database enriched in the peripheral blood of CL patients relative to HS. (C) Volcano plot highlighting overrepresented genes (n = 51) in the peripheral blood from CL patients relative to healthy subjects, FDR≤0.01 and logFC≥1. The Interferome database was used to identify Interferon-stimulated genes (ISGs), represented in red circles (n = 42, 82%). Other genes are colored in blue (n = 9, 18%).
Gsea Software Version 4.0.2, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/software+(version+r+4%2E0%2E2/gsea+software/pmc08043375-69-9-11
Average 90 stars, based on 1 article reviews
gsea software version 4.0.2 - by Bioz Stars, 2026-09
90/100 stars
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cellquest pro software (version 4.0.2)  (Becton Dickinson)
90
Becton Dickinson cellquest pro software (version 4.0.2)
(A) Principal component analysis showing principal component 1 (PC1) and PC2 for RNA-seq data from the peripheral blood of CL patients (yellow triangles, n = 51) and HS (blue circles, n = 14). A PERMANOVA statistical test was used to calculate distances between the groups, Pr(>F) = .006. (B) Gene set enrichment analysis <t>(GSEA)</t> showing normalized enrichment scores (NES) of the top 10 pathways from the Reactome Pathway Database enriched in the peripheral blood of CL patients relative to HS. (C) Volcano plot highlighting overrepresented genes (n = 51) in the peripheral blood from CL patients relative to healthy subjects, FDR≤0.01 and logFC≥1. The Interferome database was used to identify Interferon-stimulated genes (ISGs), represented in red circles (n = 42, 82%). Other genes are colored in blue (n = 9, 18%).
Cellquest Pro Software (Version 4.0.2), supplied by Becton Dickinson, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/software+(version+r+4%2E0%2E2/cellquest+software/pmc03546682-146-52-57
Average 90 stars, based on 1 article reviews
cellquest pro software (version 4.0.2) - by Bioz Stars, 2026-09
90/100 stars
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cell-questtm pro data acquisition and analysis software version 4.0.2  (Becton Dickinson)
90
Becton Dickinson cell-questtm pro data acquisition and analysis software version 4.0.2
(A) Principal component analysis showing principal component 1 (PC1) and PC2 for RNA-seq data from the peripheral blood of CL patients (yellow triangles, n = 51) and HS (blue circles, n = 14). A PERMANOVA statistical test was used to calculate distances between the groups, Pr(>F) = .006. (B) Gene set enrichment analysis <t>(GSEA)</t> showing normalized enrichment scores (NES) of the top 10 pathways from the Reactome Pathway Database enriched in the peripheral blood of CL patients relative to HS. (C) Volcano plot highlighting overrepresented genes (n = 51) in the peripheral blood from CL patients relative to healthy subjects, FDR≤0.01 and logFC≥1. The Interferome database was used to identify Interferon-stimulated genes (ISGs), represented in red circles (n = 42, 82%). Other genes are colored in blue (n = 9, 18%).
Cell Questtm Pro Data Acquisition And Analysis Software Version 4.0.2, supplied by Becton Dickinson, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/software+(version+r+4%2E0%2E2/cellquesttm+pro+software+version+4+0+2/pmc08750882-75-6-15
Average 90 stars, based on 1 article reviews
cell-questtm pro data acquisition and analysis software version 4.0.2 - by Bioz Stars, 2026-09
90/100 stars
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xlstat version 2009.4.02  (Addinsoft inc)
90
Addinsoft inc xlstat version 2009.4.02
(A) Principal component analysis showing principal component 1 (PC1) and PC2 for RNA-seq data from the peripheral blood of CL patients (yellow triangles, n = 51) and HS (blue circles, n = 14). A PERMANOVA statistical test was used to calculate distances between the groups, Pr(>F) = .006. (B) Gene set enrichment analysis <t>(GSEA)</t> showing normalized enrichment scores (NES) of the top 10 pathways from the Reactome Pathway Database enriched in the peripheral blood of CL patients relative to HS. (C) Volcano plot highlighting overrepresented genes (n = 51) in the peripheral blood from CL patients relative to healthy subjects, FDR≤0.01 and logFC≥1. The Interferome database was used to identify Interferon-stimulated genes (ISGs), represented in red circles (n = 42, 82%). Other genes are colored in blue (n = 9, 18%).
Xlstat Version 2009.4.02, supplied by Addinsoft inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/software+(version+r+4%2E0%2E2/xlstat+software/pmc02782280-580-13-16
Average 90 stars, based on 1 article reviews
xlstat version 2009.4.02 - by Bioz Stars, 2026-09
90/100 stars
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software rstudio  (RStudio)
90
RStudio software rstudio
(A) Principal component analysis showing principal component 1 (PC1) and PC2 for RNA-seq data from the peripheral blood of CL patients (yellow triangles, n = 51) and HS (blue circles, n = 14). A PERMANOVA statistical test was used to calculate distances between the groups, Pr(>F) = .006. (B) Gene set enrichment analysis <t>(GSEA)</t> showing normalized enrichment scores (NES) of the top 10 pathways from the Reactome Pathway Database enriched in the peripheral blood of CL patients relative to HS. (C) Volcano plot highlighting overrepresented genes (n = 51) in the peripheral blood from CL patients relative to healthy subjects, FDR≤0.01 and logFC≥1. The Interferome database was used to identify Interferon-stimulated genes (ISGs), represented in red circles (n = 42, 82%). Other genes are colored in blue (n = 9, 18%).
Software Rstudio, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/software+(version+r+4%2E0%2E2/rstudio+software/pm40219082-213-34-38
Average 90 stars, based on 1 article reviews
software rstudio - by Bioz Stars, 2026-09
90/100 stars
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r statistical software  (RStudio)
90
RStudio r statistical software
(A) Principal component analysis showing principal component 1 (PC1) and PC2 for RNA-seq data from the peripheral blood of CL patients (yellow triangles, n = 51) and HS (blue circles, n = 14). A PERMANOVA statistical test was used to calculate distances between the groups, Pr(>F) = .006. (B) Gene set enrichment analysis <t>(GSEA)</t> showing normalized enrichment scores (NES) of the top 10 pathways from the Reactome Pathway Database enriched in the peripheral blood of CL patients relative to HS. (C) Volcano plot highlighting overrepresented genes (n = 51) in the peripheral blood from CL patients relative to healthy subjects, FDR≤0.01 and logFC≥1. The Interferome database was used to identify Interferon-stimulated genes (ISGs), represented in red circles (n = 42, 82%). Other genes are colored in blue (n = 9, 18%).
R Statistical Software, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/software+(version+r+4%2E0%2E2/r+statistical+software/pmc08319300-263-8-5
Average 90 stars, based on 1 article reviews
r statistical software - by Bioz Stars, 2026-09
90/100 stars
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r software version 4.0.2  (RStudio)
90
RStudio r software version 4.0.2
(A) Principal component analysis showing principal component 1 (PC1) and PC2 for RNA-seq data from the peripheral blood of CL patients (yellow triangles, n = 51) and HS (blue circles, n = 14). A PERMANOVA statistical test was used to calculate distances between the groups, Pr(>F) = .006. (B) Gene set enrichment analysis <t>(GSEA)</t> showing normalized enrichment scores (NES) of the top 10 pathways from the Reactome Pathway Database enriched in the peripheral blood of CL patients relative to HS. (C) Volcano plot highlighting overrepresented genes (n = 51) in the peripheral blood from CL patients relative to healthy subjects, FDR≤0.01 and logFC≥1. The Interferome database was used to identify Interferon-stimulated genes (ISGs), represented in red circles (n = 42, 82%). Other genes are colored in blue (n = 9, 18%).
R Software Version 4.0.2, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/software+(version+r+4%2E0%2E2/rstudio+version+1+3+1093/pmc12028783-106-6-11
Average 90 stars, based on 1 article reviews
r software version 4.0.2 - by Bioz Stars, 2026-09
90/100 stars
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pmod software version 4.02  (PMOD Technologies)
90
PMOD Technologies pmod software version 4.02
(A) Principal component analysis showing principal component 1 (PC1) and PC2 for RNA-seq data from the peripheral blood of CL patients (yellow triangles, n = 51) and HS (blue circles, n = 14). A PERMANOVA statistical test was used to calculate distances between the groups, Pr(>F) = .006. (B) Gene set enrichment analysis <t>(GSEA)</t> showing normalized enrichment scores (NES) of the top 10 pathways from the Reactome Pathway Database enriched in the peripheral blood of CL patients relative to HS. (C) Volcano plot highlighting overrepresented genes (n = 51) in the peripheral blood from CL patients relative to healthy subjects, FDR≤0.01 and logFC≥1. The Interferome database was used to identify Interferon-stimulated genes (ISGs), represented in red circles (n = 42, 82%). Other genes are colored in blue (n = 9, 18%).
Pmod Software Version 4.02, supplied by PMOD Technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/software+(version+r+4%2E0%2E2/pmod+software+package/pmc08509689-182-9-7
Average 90 stars, based on 1 article reviews
pmod software version 4.02 - by Bioz Stars, 2026-09
90/100 stars
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scion image software  (scion corporation)
90
scion corporation scion image software
(A) Principal component analysis showing principal component 1 (PC1) and PC2 for RNA-seq data from the peripheral blood of CL patients (yellow triangles, n = 51) and HS (blue circles, n = 14). A PERMANOVA statistical test was used to calculate distances between the groups, Pr(>F) = .006. (B) Gene set enrichment analysis <t>(GSEA)</t> showing normalized enrichment scores (NES) of the top 10 pathways from the Reactome Pathway Database enriched in the peripheral blood of CL patients relative to HS. (C) Volcano plot highlighting overrepresented genes (n = 51) in the peripheral blood from CL patients relative to healthy subjects, FDR≤0.01 and logFC≥1. The Interferome database was used to identify Interferon-stimulated genes (ISGs), represented in red circles (n = 42, 82%). Other genes are colored in blue (n = 9, 18%).
Scion Image Software, supplied by scion corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/software+(version+r+4%2E0%2E2/scion+image+software/pm27810201-76-9-15
Average 90 stars, based on 1 article reviews
scion image software - by Bioz Stars, 2026-09
90/100 stars
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software version beta 4.0.2  (scion corporation)
90
scion corporation software version beta 4.0.2
(A) Principal component analysis showing principal component 1 (PC1) and PC2 for RNA-seq data from the peripheral blood of CL patients (yellow triangles, n = 51) and HS (blue circles, n = 14). A PERMANOVA statistical test was used to calculate distances between the groups, Pr(>F) = .006. (B) Gene set enrichment analysis <t>(GSEA)</t> showing normalized enrichment scores (NES) of the top 10 pathways from the Reactome Pathway Database enriched in the peripheral blood of CL patients relative to HS. (C) Volcano plot highlighting overrepresented genes (n = 51) in the peripheral blood from CL patients relative to healthy subjects, FDR≤0.01 and logFC≥1. The Interferome database was used to identify Interferon-stimulated genes (ISGs), represented in red circles (n = 42, 82%). Other genes are colored in blue (n = 9, 18%).
Software Version Beta 4.0.2, supplied by scion corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/software+(version+r+4%2E0%2E2/beta+4+02+win/10__1074_slash_jbc__m109__036632-79-41-42
Average 90 stars, based on 1 article reviews
software version beta 4.0.2 - by Bioz Stars, 2026-09
90/100 stars
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spot advanced version 4.0.2 software for windows  (W Nuhsbaum)
90
W Nuhsbaum spot advanced version 4.0.2 software for windows
(A) Principal component analysis showing principal component 1 (PC1) and PC2 for RNA-seq data from the peripheral blood of CL patients (yellow triangles, n = 51) and HS (blue circles, n = 14). A PERMANOVA statistical test was used to calculate distances between the groups, Pr(>F) = .006. (B) Gene set enrichment analysis <t>(GSEA)</t> showing normalized enrichment scores (NES) of the top 10 pathways from the Reactome Pathway Database enriched in the peripheral blood of CL patients relative to HS. (C) Volcano plot highlighting overrepresented genes (n = 51) in the peripheral blood from CL patients relative to healthy subjects, FDR≤0.01 and logFC≥1. The Interferome database was used to identify Interferon-stimulated genes (ISGs), represented in red circles (n = 42, 82%). Other genes are colored in blue (n = 9, 18%).
Spot Advanced Version 4.0.2 Software For Windows, supplied by W Nuhsbaum, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/software+(version+r+4%2E0%2E2/spot+advanced+version+4+0+2+software+for+windows/pmc02662768-113-4-11
Average 90 stars, based on 1 article reviews
spot advanced version 4.0.2 software for windows - by Bioz Stars, 2026-09
90/100 stars
  Buy from Supplier
igor pro software  (wavemetrics inc)
90
wavemetrics inc igor pro software
(A) Principal component analysis showing principal component 1 (PC1) and PC2 for RNA-seq data from the peripheral blood of CL patients (yellow triangles, n = 51) and HS (blue circles, n = 14). A PERMANOVA statistical test was used to calculate distances between the groups, Pr(>F) = .006. (B) Gene set enrichment analysis <t>(GSEA)</t> showing normalized enrichment scores (NES) of the top 10 pathways from the Reactome Pathway Database enriched in the peripheral blood of CL patients relative to HS. (C) Volcano plot highlighting overrepresented genes (n = 51) in the peripheral blood from CL patients relative to healthy subjects, FDR≤0.01 and logFC≥1. The Interferome database was used to identify Interferon-stimulated genes (ISGs), represented in red circles (n = 42, 82%). Other genes are colored in blue (n = 9, 18%).
Igor Pro Software, supplied by wavemetrics inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/software+(version+r+4%2E0%2E2/igor+pro+software/pm15489225-150-39-44
Average 90 stars, based on 1 article reviews
igor pro software - by Bioz Stars, 2026-09
90/100 stars
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Image Search Results


(A) Principal component analysis showing principal component 1 (PC1) and PC2 for RNA-seq data from the peripheral blood of CL patients (yellow triangles, n = 51) and HS (blue circles, n = 14). A PERMANOVA statistical test was used to calculate distances between the groups, Pr(>F) = .006. (B) Gene set enrichment analysis (GSEA) showing normalized enrichment scores (NES) of the top 10 pathways from the Reactome Pathway Database enriched in the peripheral blood of CL patients relative to HS. (C) Volcano plot highlighting overrepresented genes (n = 51) in the peripheral blood from CL patients relative to healthy subjects, FDR≤0.01 and logFC≥1. The Interferome database was used to identify Interferon-stimulated genes (ISGs), represented in red circles (n = 42, 82%). Other genes are colored in blue (n = 9, 18%).

Journal: PLoS Neglected Tropical Diseases

Article Title: Localized skin inflammation during cutaneous leishmaniasis drives a chronic, systemic IFN-γ signature

doi: 10.1371/journal.pntd.0009321

Figure Lengend Snippet: (A) Principal component analysis showing principal component 1 (PC1) and PC2 for RNA-seq data from the peripheral blood of CL patients (yellow triangles, n = 51) and HS (blue circles, n = 14). A PERMANOVA statistical test was used to calculate distances between the groups, Pr(>F) = .006. (B) Gene set enrichment analysis (GSEA) showing normalized enrichment scores (NES) of the top 10 pathways from the Reactome Pathway Database enriched in the peripheral blood of CL patients relative to HS. (C) Volcano plot highlighting overrepresented genes (n = 51) in the peripheral blood from CL patients relative to healthy subjects, FDR≤0.01 and logFC≥1. The Interferome database was used to identify Interferon-stimulated genes (ISGs), represented in red circles (n = 42, 82%). Other genes are colored in blue (n = 9, 18%).

Article Snippet: Gene Set Enrichment Analysis (GSEA) was carried out using GSEA software (Broad Institute, version 4.0.2) and Reactome, KEGG and Biocarta pathways databases [ ].

Techniques: RNA Sequencing

(A) Expression of genes encoding cytolytic granules ( GZMA , GZMB , GZMH , GNLY , and PRF1 ) in the peripheral blood of HS and CL patients. Wilcoxon rank-sum test was used for statistical analysis, *P<0.05, **P<0.01, ***P<0.001 and ****P < .0001. Gene expression is represented as counts per million (CPM) in log2 scale. (B) GSEA enrichment plots showing three cytotoxicity-related pathways from the Biocarta and KEGG Pathway Databases enriched in the CL peripheral blood relative to HS. Pathway name is indicated in parenthesis, next to the pathway database source. Light blue box indicates genes included in the Leading Edge subgroup from each pathway that were enriched and differentially expressed in CL relative to HS. Genes are shown in ranked order according to their running enrichment score. NES, normalized enrichment score; FDR, false discovery rate.

Journal: PLoS Neglected Tropical Diseases

Article Title: Localized skin inflammation during cutaneous leishmaniasis drives a chronic, systemic IFN-γ signature

doi: 10.1371/journal.pntd.0009321

Figure Lengend Snippet: (A) Expression of genes encoding cytolytic granules ( GZMA , GZMB , GZMH , GNLY , and PRF1 ) in the peripheral blood of HS and CL patients. Wilcoxon rank-sum test was used for statistical analysis, *P<0.05, **P<0.01, ***P<0.001 and ****P < .0001. Gene expression is represented as counts per million (CPM) in log2 scale. (B) GSEA enrichment plots showing three cytotoxicity-related pathways from the Biocarta and KEGG Pathway Databases enriched in the CL peripheral blood relative to HS. Pathway name is indicated in parenthesis, next to the pathway database source. Light blue box indicates genes included in the Leading Edge subgroup from each pathway that were enriched and differentially expressed in CL relative to HS. Genes are shown in ranked order according to their running enrichment score. NES, normalized enrichment score; FDR, false discovery rate.

Article Snippet: Gene Set Enrichment Analysis (GSEA) was carried out using GSEA software (Broad Institute, version 4.0.2) and Reactome, KEGG and Biocarta pathways databases [ ].

Techniques: Expressing, Gene Expression