scanarray microarray analysis software Search Results


scanarray microarray analysis system  (Revvity)
88
Revvity scanarray microarray analysis system
A ) Experimental design: the miRNA population from each cell line was compared to a common reference sample consisting of a balanced mixture of eight small RNA samples (< 200 nt) prepared from the same cell lines. Two replicates of each experiment were performed using different <t>microarray</t> slides in which sample and reference RNAs, labeled with Cy3 (gray arrow) or Cy5 (black arrow) fluorochromes, were crossed in both combinations (dye-swapping procedure). B ) Heat map of 16 discriminant miRNAs between PAX3/FOXO1 positive ARMS (in gray on the right, RH4, RH30, RH28) and negative (in dark grey on the left, RD, SMS-CTR, RH18, RH36, CCA) RMS cell lines identified by SAM analysis ( rows : miRNAs; columns : RMS cell lines). A color-coded scale for the normalized expression values was used as follows: yellow and blue represent high and low expression levels in RMS cell lines with respect to a reference sample (a pool of eight RMS cell lines). The expression level of each miRNA was calculated as the ln (RMS cell line/Pool). C ) Expression levels of miR-199a, miR-23a and miR-27a in eight RMS cell lines obtained with qRT-PCR. Two independent experiments were performed in triplicate. Results are shown as relative expression ratio obtained with the 2 -ΔΔCt method. RNU6B was used as reference miRNA. Vertical bars represent the 95% confidence interval (IC).
Scanarray Microarray Analysis System, supplied by Revvity, used in various techniques. Bioz Stars score: 88/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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scanarray microarray analysis system - by Bioz Stars, 2026-04
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scanarray 5000 microarray analysis system  (Revvity)
99
Revvity scanarray 5000 microarray analysis system
A ) Experimental design: the miRNA population from each cell line was compared to a common reference sample consisting of a balanced mixture of eight small RNA samples (< 200 nt) prepared from the same cell lines. Two replicates of each experiment were performed using different <t>microarray</t> slides in which sample and reference RNAs, labeled with Cy3 (gray arrow) or Cy5 (black arrow) fluorochromes, were crossed in both combinations (dye-swapping procedure). B ) Heat map of 16 discriminant miRNAs between PAX3/FOXO1 positive ARMS (in gray on the right, RH4, RH30, RH28) and negative (in dark grey on the left, RD, SMS-CTR, RH18, RH36, CCA) RMS cell lines identified by SAM analysis ( rows : miRNAs; columns : RMS cell lines). A color-coded scale for the normalized expression values was used as follows: yellow and blue represent high and low expression levels in RMS cell lines with respect to a reference sample (a pool of eight RMS cell lines). The expression level of each miRNA was calculated as the ln (RMS cell line/Pool). C ) Expression levels of miR-199a, miR-23a and miR-27a in eight RMS cell lines obtained with qRT-PCR. Two independent experiments were performed in triplicate. Results are shown as relative expression ratio obtained with the 2 -ΔΔCt method. RNU6B was used as reference miRNA. Vertical bars represent the 95% confidence interval (IC).
Scanarray 5000 Microarray Analysis System, supplied by Revvity, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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scanarray 5000 microarray analysis system - by Bioz Stars, 2026-04
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microarray scanner scanarray 4000  (Lumonics Inc)
90
Lumonics Inc microarray scanner scanarray 4000
A ) Experimental design: the miRNA population from each cell line was compared to a common reference sample consisting of a balanced mixture of eight small RNA samples (< 200 nt) prepared from the same cell lines. Two replicates of each experiment were performed using different <t>microarray</t> slides in which sample and reference RNAs, labeled with Cy3 (gray arrow) or Cy5 (black arrow) fluorochromes, were crossed in both combinations (dye-swapping procedure). B ) Heat map of 16 discriminant miRNAs between PAX3/FOXO1 positive ARMS (in gray on the right, RH4, RH30, RH28) and negative (in dark grey on the left, RD, SMS-CTR, RH18, RH36, CCA) RMS cell lines identified by SAM analysis ( rows : miRNAs; columns : RMS cell lines). A color-coded scale for the normalized expression values was used as follows: yellow and blue represent high and low expression levels in RMS cell lines with respect to a reference sample (a pool of eight RMS cell lines). The expression level of each miRNA was calculated as the ln (RMS cell line/Pool). C ) Expression levels of miR-199a, miR-23a and miR-27a in eight RMS cell lines obtained with qRT-PCR. Two independent experiments were performed in triplicate. Results are shown as relative expression ratio obtained with the 2 -ΔΔCt method. RNU6B was used as reference miRNA. Vertical bars represent the 95% confidence interval (IC).
Microarray Scanner Scanarray 4000, supplied by Lumonics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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microarray scanner scanarray 4000 - by Bioz Stars, 2026-04
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scanarray microarray analysis software  (Lumonics Inc)
90
Lumonics Inc scanarray microarray analysis software
A ) Experimental design: the miRNA population from each cell line was compared to a common reference sample consisting of a balanced mixture of eight small RNA samples (< 200 nt) prepared from the same cell lines. Two replicates of each experiment were performed using different <t>microarray</t> slides in which sample and reference RNAs, labeled with Cy3 (gray arrow) or Cy5 (black arrow) fluorochromes, were crossed in both combinations (dye-swapping procedure). B ) Heat map of 16 discriminant miRNAs between PAX3/FOXO1 positive ARMS (in gray on the right, RH4, RH30, RH28) and negative (in dark grey on the left, RD, SMS-CTR, RH18, RH36, CCA) RMS cell lines identified by SAM analysis ( rows : miRNAs; columns : RMS cell lines). A color-coded scale for the normalized expression values was used as follows: yellow and blue represent high and low expression levels in RMS cell lines with respect to a reference sample (a pool of eight RMS cell lines). The expression level of each miRNA was calculated as the ln (RMS cell line/Pool). C ) Expression levels of miR-199a, miR-23a and miR-27a in eight RMS cell lines obtained with qRT-PCR. Two independent experiments were performed in triplicate. Results are shown as relative expression ratio obtained with the 2 -ΔΔCt method. RNU6B was used as reference miRNA. Vertical bars represent the 95% confidence interval (IC).
Scanarray Microarray Analysis Software, supplied by Lumonics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/scanarray microarray analysis software/product/Lumonics Inc
Average 90 stars, based on 1 article reviews
scanarray microarray analysis software - by Bioz Stars, 2026-04
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dna chip scanner scanarray lite  (Lumonics Inc)
90
Lumonics Inc dna chip scanner scanarray lite
A ) Experimental design: the miRNA population from each cell line was compared to a common reference sample consisting of a balanced mixture of eight small RNA samples (< 200 nt) prepared from the same cell lines. Two replicates of each experiment were performed using different <t>microarray</t> slides in which sample and reference RNAs, labeled with Cy3 (gray arrow) or Cy5 (black arrow) fluorochromes, were crossed in both combinations (dye-swapping procedure). B ) Heat map of 16 discriminant miRNAs between PAX3/FOXO1 positive ARMS (in gray on the right, RH4, RH30, RH28) and negative (in dark grey on the left, RD, SMS-CTR, RH18, RH36, CCA) RMS cell lines identified by SAM analysis ( rows : miRNAs; columns : RMS cell lines). A color-coded scale for the normalized expression values was used as follows: yellow and blue represent high and low expression levels in RMS cell lines with respect to a reference sample (a pool of eight RMS cell lines). The expression level of each miRNA was calculated as the ln (RMS cell line/Pool). C ) Expression levels of miR-199a, miR-23a and miR-27a in eight RMS cell lines obtained with qRT-PCR. Two independent experiments were performed in triplicate. Results are shown as relative expression ratio obtained with the 2 -ΔΔCt method. RNU6B was used as reference miRNA. Vertical bars represent the 95% confidence interval (IC).
Dna Chip Scanner Scanarray Lite, supplied by Lumonics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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two-color microarray scanner scanarray 5000xl  (Lumonics Inc)
90
Lumonics Inc two-color microarray scanner scanarray 5000xl
A ) Experimental design: the miRNA population from each cell line was compared to a common reference sample consisting of a balanced mixture of eight small RNA samples (< 200 nt) prepared from the same cell lines. Two replicates of each experiment were performed using different <t>microarray</t> slides in which sample and reference RNAs, labeled with Cy3 (gray arrow) or Cy5 (black arrow) fluorochromes, were crossed in both combinations (dye-swapping procedure). B ) Heat map of 16 discriminant miRNAs between PAX3/FOXO1 positive ARMS (in gray on the right, RH4, RH30, RH28) and negative (in dark grey on the left, RD, SMS-CTR, RH18, RH36, CCA) RMS cell lines identified by SAM analysis ( rows : miRNAs; columns : RMS cell lines). A color-coded scale for the normalized expression values was used as follows: yellow and blue represent high and low expression levels in RMS cell lines with respect to a reference sample (a pool of eight RMS cell lines). The expression level of each miRNA was calculated as the ln (RMS cell line/Pool). C ) Expression levels of miR-199a, miR-23a and miR-27a in eight RMS cell lines obtained with qRT-PCR. Two independent experiments were performed in triplicate. Results are shown as relative expression ratio obtained with the 2 -ΔΔCt method. RNU6B was used as reference miRNA. Vertical bars represent the 95% confidence interval (IC).
Two Color Microarray Scanner Scanarray 5000xl, supplied by Lumonics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/two-color microarray scanner scanarray 5000xl/product/Lumonics Inc
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two-color microarray scanner scanarray 5000xl - by Bioz Stars, 2026-04
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microarray scanner scanarray 4000xl  (Northville Industries)
90
Northville Industries microarray scanner scanarray 4000xl
A ) Experimental design: the miRNA population from each cell line was compared to a common reference sample consisting of a balanced mixture of eight small RNA samples (< 200 nt) prepared from the same cell lines. Two replicates of each experiment were performed using different <t>microarray</t> slides in which sample and reference RNAs, labeled with Cy3 (gray arrow) or Cy5 (black arrow) fluorochromes, were crossed in both combinations (dye-swapping procedure). B ) Heat map of 16 discriminant miRNAs between PAX3/FOXO1 positive ARMS (in gray on the right, RH4, RH30, RH28) and negative (in dark grey on the left, RD, SMS-CTR, RH18, RH36, CCA) RMS cell lines identified by SAM analysis ( rows : miRNAs; columns : RMS cell lines). A color-coded scale for the normalized expression values was used as follows: yellow and blue represent high and low expression levels in RMS cell lines with respect to a reference sample (a pool of eight RMS cell lines). The expression level of each miRNA was calculated as the ln (RMS cell line/Pool). C ) Expression levels of miR-199a, miR-23a and miR-27a in eight RMS cell lines obtained with qRT-PCR. Two independent experiments were performed in triplicate. Results are shown as relative expression ratio obtained with the 2 -ΔΔCt method. RNU6B was used as reference miRNA. Vertical bars represent the 95% confidence interval (IC).
Microarray Scanner Scanarray 4000xl, supplied by Northville Industries, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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scanarray software  (RayBiotech inc)
90
RayBiotech inc scanarray software
A ) Experimental design: the miRNA population from each cell line was compared to a common reference sample consisting of a balanced mixture of eight small RNA samples (< 200 nt) prepared from the same cell lines. Two replicates of each experiment were performed using different <t>microarray</t> slides in which sample and reference RNAs, labeled with Cy3 (gray arrow) or Cy5 (black arrow) fluorochromes, were crossed in both combinations (dye-swapping procedure). B ) Heat map of 16 discriminant miRNAs between PAX3/FOXO1 positive ARMS (in gray on the right, RH4, RH30, RH28) and negative (in dark grey on the left, RD, SMS-CTR, RH18, RH36, CCA) RMS cell lines identified by SAM analysis ( rows : miRNAs; columns : RMS cell lines). A color-coded scale for the normalized expression values was used as follows: yellow and blue represent high and low expression levels in RMS cell lines with respect to a reference sample (a pool of eight RMS cell lines). The expression level of each miRNA was calculated as the ln (RMS cell line/Pool). C ) Expression levels of miR-199a, miR-23a and miR-27a in eight RMS cell lines obtained with qRT-PCR. Two independent experiments were performed in triplicate. Results are shown as relative expression ratio obtained with the 2 -ΔΔCt method. RNU6B was used as reference miRNA. Vertical bars represent the 95% confidence interval (IC).
Scanarray Software, supplied by RayBiotech inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/scanarray software/product/RayBiotech inc
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scanarray software - by Bioz Stars, 2026-04
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microarray scanners (gsi scanarray™  (Lumonics Inc)
90
Lumonics Inc microarray scanners (gsi scanarray™
A ) Experimental design: the miRNA population from each cell line was compared to a common reference sample consisting of a balanced mixture of eight small RNA samples (< 200 nt) prepared from the same cell lines. Two replicates of each experiment were performed using different <t>microarray</t> slides in which sample and reference RNAs, labeled with Cy3 (gray arrow) or Cy5 (black arrow) fluorochromes, were crossed in both combinations (dye-swapping procedure). B ) Heat map of 16 discriminant miRNAs between PAX3/FOXO1 positive ARMS (in gray on the right, RH4, RH30, RH28) and negative (in dark grey on the left, RD, SMS-CTR, RH18, RH36, CCA) RMS cell lines identified by SAM analysis ( rows : miRNAs; columns : RMS cell lines). A color-coded scale for the normalized expression values was used as follows: yellow and blue represent high and low expression levels in RMS cell lines with respect to a reference sample (a pool of eight RMS cell lines). The expression level of each miRNA was calculated as the ln (RMS cell line/Pool). C ) Expression levels of miR-199a, miR-23a and miR-27a in eight RMS cell lines obtained with qRT-PCR. Two independent experiments were performed in triplicate. Results are shown as relative expression ratio obtained with the 2 -ΔΔCt method. RNU6B was used as reference miRNA. Vertical bars represent the 95% confidence interval (IC).
Microarray Scanners (Gsi Scanarray™, supplied by Lumonics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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scanning laser microscope scanarray 4000  (Lumonics Inc)
90
Lumonics Inc scanning laser microscope scanarray 4000
A ) Experimental design: the miRNA population from each cell line was compared to a common reference sample consisting of a balanced mixture of eight small RNA samples (< 200 nt) prepared from the same cell lines. Two replicates of each experiment were performed using different <t>microarray</t> slides in which sample and reference RNAs, labeled with Cy3 (gray arrow) or Cy5 (black arrow) fluorochromes, were crossed in both combinations (dye-swapping procedure). B ) Heat map of 16 discriminant miRNAs between PAX3/FOXO1 positive ARMS (in gray on the right, RH4, RH30, RH28) and negative (in dark grey on the left, RD, SMS-CTR, RH18, RH36, CCA) RMS cell lines identified by SAM analysis ( rows : miRNAs; columns : RMS cell lines). A color-coded scale for the normalized expression values was used as follows: yellow and blue represent high and low expression levels in RMS cell lines with respect to a reference sample (a pool of eight RMS cell lines). The expression level of each miRNA was calculated as the ln (RMS cell line/Pool). C ) Expression levels of miR-199a, miR-23a and miR-27a in eight RMS cell lines obtained with qRT-PCR. Two independent experiments were performed in triplicate. Results are shown as relative expression ratio obtained with the 2 -ΔΔCt method. RNU6B was used as reference miRNA. Vertical bars represent the 95% confidence interval (IC).
Scanning Laser Microscope Scanarray 4000, supplied by Lumonics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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dna chip scanner scanarray lite  (GSI Lumonics Inc)
90
GSI Lumonics Inc dna chip scanner scanarray lite
Histology results according to cytology, <t> HPV </t> <t> DNA chip </t> results, <xref ref-type= a and HC2 results" width="250" height="auto" />
Dna Chip Scanner Scanarray Lite, supplied by GSI Lumonics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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scanarray® 5000 xl microarray analysis system  (Packard Instruments)
90
Packard Instruments scanarray® 5000 xl microarray analysis system
Histology results according to cytology, <t> HPV </t> <t> DNA chip </t> results, <xref ref-type= a and HC2 results" width="250" height="auto" />
Scanarray® 5000 Xl Microarray Analysis System, supplied by Packard Instruments, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


A ) Experimental design: the miRNA population from each cell line was compared to a common reference sample consisting of a balanced mixture of eight small RNA samples (< 200 nt) prepared from the same cell lines. Two replicates of each experiment were performed using different microarray slides in which sample and reference RNAs, labeled with Cy3 (gray arrow) or Cy5 (black arrow) fluorochromes, were crossed in both combinations (dye-swapping procedure). B ) Heat map of 16 discriminant miRNAs between PAX3/FOXO1 positive ARMS (in gray on the right, RH4, RH30, RH28) and negative (in dark grey on the left, RD, SMS-CTR, RH18, RH36, CCA) RMS cell lines identified by SAM analysis ( rows : miRNAs; columns : RMS cell lines). A color-coded scale for the normalized expression values was used as follows: yellow and blue represent high and low expression levels in RMS cell lines with respect to a reference sample (a pool of eight RMS cell lines). The expression level of each miRNA was calculated as the ln (RMS cell line/Pool). C ) Expression levels of miR-199a, miR-23a and miR-27a in eight RMS cell lines obtained with qRT-PCR. Two independent experiments were performed in triplicate. Results are shown as relative expression ratio obtained with the 2 -ΔΔCt method. RNU6B was used as reference miRNA. Vertical bars represent the 95% confidence interval (IC).

Journal: PLoS ONE

Article Title: MicroRNA-27a Contributes to Rhabdomyosarcoma Cell Proliferation by Suppressing RARA and RXRA

doi: 10.1371/journal.pone.0125171

Figure Lengend Snippet: A ) Experimental design: the miRNA population from each cell line was compared to a common reference sample consisting of a balanced mixture of eight small RNA samples (< 200 nt) prepared from the same cell lines. Two replicates of each experiment were performed using different microarray slides in which sample and reference RNAs, labeled with Cy3 (gray arrow) or Cy5 (black arrow) fluorochromes, were crossed in both combinations (dye-swapping procedure). B ) Heat map of 16 discriminant miRNAs between PAX3/FOXO1 positive ARMS (in gray on the right, RH4, RH30, RH28) and negative (in dark grey on the left, RD, SMS-CTR, RH18, RH36, CCA) RMS cell lines identified by SAM analysis ( rows : miRNAs; columns : RMS cell lines). A color-coded scale for the normalized expression values was used as follows: yellow and blue represent high and low expression levels in RMS cell lines with respect to a reference sample (a pool of eight RMS cell lines). The expression level of each miRNA was calculated as the ln (RMS cell line/Pool). C ) Expression levels of miR-199a, miR-23a and miR-27a in eight RMS cell lines obtained with qRT-PCR. Two independent experiments were performed in triplicate. Results are shown as relative expression ratio obtained with the 2 -ΔΔCt method. RNU6B was used as reference miRNA. Vertical bars represent the 95% confidence interval (IC).

Article Snippet: Array scanning was carried out using a GSI Lumonics LITE dual confocal laser scanner with a ScanArray Microarray Analysis System (Perkin Elmer, Waltham, MA), and raw images were analyzed with QuantArray Analysis Software (GSI Lumonics, Ottawa, Canada).

Techniques: Microarray, Labeling, Expressing, Quantitative RT-PCR

Histology results according to cytology, HPV DNA chip results, <xref ref-type= a and HC2 results" width="100%" height="100%">

Journal: Journal of Pathology and Translational Medicine

Article Title: Clinical Significance of an HPV DNA Chip Test with Emphasis on HPV-16 and/or HPV-18 Detection in Korean Gynecological Patients

doi: 10.4132/jptm.2016.05.09

Figure Lengend Snippet: Histology results according to cytology, HPV DNA chip results, a and HC2 results

Article Snippet: The hybridized HPV DNA was visualized using a DNA chip scanner (ScanArray LITE, GSI Lumonics Inc., Bedford, MA, USA).

Techniques:

Age-adjusted odds ratio for ≥HSIL histology in each HPV group

Journal: Journal of Pathology and Translational Medicine

Article Title: Clinical Significance of an HPV DNA Chip Test with Emphasis on HPV-16 and/or HPV-18 Detection in Korean Gynecological Patients

doi: 10.4132/jptm.2016.05.09

Figure Lengend Snippet: Age-adjusted odds ratio for ≥HSIL histology in each HPV group

Article Snippet: The hybridized HPV DNA was visualized using a DNA chip scanner (ScanArray LITE, GSI Lumonics Inc., Bedford, MA, USA).

Techniques:

Comparison between HPV DNA chip results <xref ref-type= a and HC2 results" width="100%" height="100%">

Journal: Journal of Pathology and Translational Medicine

Article Title: Clinical Significance of an HPV DNA Chip Test with Emphasis on HPV-16 and/or HPV-18 Detection in Korean Gynecological Patients

doi: 10.4132/jptm.2016.05.09

Figure Lengend Snippet: Comparison between HPV DNA chip results a and HC2 results

Article Snippet: The hybridized HPV DNA was visualized using a DNA chip scanner (ScanArray LITE, GSI Lumonics Inc., Bedford, MA, USA).

Techniques: Comparison

Clinical performance of cytology, HPV DNA chip test, and HC2 test

Journal: Journal of Pathology and Translational Medicine

Article Title: Clinical Significance of an HPV DNA Chip Test with Emphasis on HPV-16 and/or HPV-18 Detection in Korean Gynecological Patients

doi: 10.4132/jptm.2016.05.09

Figure Lengend Snippet: Clinical performance of cytology, HPV DNA chip test, and HC2 test

Article Snippet: The hybridized HPV DNA was visualized using a DNA chip scanner (ScanArray LITE, GSI Lumonics Inc., Bedford, MA, USA).

Techniques:

Age-adjusted odds ratio for ≥HSIL histology in each HPV group exhibiting “NILM” and “ASC or AGC” cytology

Journal: Journal of Pathology and Translational Medicine

Article Title: Clinical Significance of an HPV DNA Chip Test with Emphasis on HPV-16 and/or HPV-18 Detection in Korean Gynecological Patients

doi: 10.4132/jptm.2016.05.09

Figure Lengend Snippet: Age-adjusted odds ratio for ≥HSIL histology in each HPV group exhibiting “NILM” and “ASC or AGC” cytology

Article Snippet: The hybridized HPV DNA was visualized using a DNA chip scanner (ScanArray LITE, GSI Lumonics Inc., Bedford, MA, USA).

Techniques: