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Addgene inc
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Addgene inc
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Addgene inc
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Addgene inc
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Ceradyne Inc
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GenScript corporation
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Promega
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GoldenGate Software Inc
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Nomor Research GmbH
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GenScript corporation
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Image Search Results
Journal: Molecular biology reports
Article Title: Miniaturization of CRISPRa plasmids for efficient delivery into renal epithelial cells and Pkd1 transactivation
doi: 10.1007/s11033-026-11872-1
Figure Lengend Snippet: Miniaturization of plasmid vectors. (a) Validation of 9 kB dCas9-VP64-EGFP-2XEsp3I plasmid miniaturization to 6 kB mdCas9-VP64-EGFP vector by agarose gel electrophoresis. The bands of interest are indicated by numbers to the right of the lane. Lane 1 displays the products of the simultaneous digestion-ligation reaction ( Esp3I + T4 Ligase). Band 1 represents the re-circularized region of interest (ROI) i.e mini plasmid and band 2 the re-circularized vector backbone. The higher molecular weight bands likely represent concatemers. Lane 2 shows Esp3I digestion alone, showing the position of bands for the linearized ROI (band 1) and linearized vector backbone (band 2). Lane 3 shows the undigested full-length plasmid control. Lane 4 contains the DNA molecular weight marker. Lane 5 shows the final products following Esp3I and T5 exonuclease treatment: the circular mdCas9-VP64-EGFP mini plasmid (band 1) and the circular vector backbone (band 2). Lanes 6 and 7 serve as controls, demonstrating T5 exonuclease activity on linearized and undigested templates, respectively. ( b) Plasmid map of circular 5.9 kB mdCas9-VP64-EGFP mini plasmid. (c) Validation of 11.3 kB dCas9-VPR-2XSapI plasmid miniaturization to 6.7 kB mdCas9-VPR vector by agarose gel electrophoresis. The bands of interest are indicated by numbers to the right of the lane. Lane 1 shows the products of the simultaneous digestion-ligation reaction ( SapI + T4 Ligase); band 1 represents higher-molecular weight concatemers, band 2 represents the re-circularized region of interest (ROI) i.e mdCas9-VPR, and bands 3, 4, and 5 represent linear vector backbone fragments. Lane 2 shows SapI -only digestion, generating the linear ROI and multiple backbone fragments. Lane 3 shows the undigested parent plasmid. Lane 4 contains the DNA molecular weight marker. Lane 5 shows the final reaction products post- SapI and T5 exonuclease treatment; Band 2 is the T5-resistant circular mdCas9-VPR plasmid. As the backbone fragments lacked complementary overhangs, they remained linear and were degraded by T5, while higher molecular weight circular concatemers remain visible (Lane 5, above band 1). Lanes 6 and 7 serve as controls for T5 exonuclease activity. (d) Plasmid map of circular 6.7 kB mdCas9-VPR vector.
Article Snippet: The resulting ~11.3 kB dCas9-VPR-2XSapI ( Supplementary Fig. 2 ) was miniaturized using
Techniques: Plasmid Preparation, Biomarker Discovery, Agarose Gel Electrophoresis, Ligation, Molecular Weight, Control, Marker, Activity Assay