pfam Search Results


pfam pf02390  (InterPro Inc)
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InterPro Inc pfam pf02390
Pfam Pf02390, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pfam-interpro entry relationships  (InterPro Inc)
90
InterPro Inc pfam-interpro entry relationships
Pfam Interpro Entry Relationships, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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domains pfam pf00051  (Kringle Pharma Inc)
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Kringle Pharma Inc domains pfam pf00051
Domains Pfam Pf00051, supplied by Kringle Pharma Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pfam analysis of ensembl and celera gene sets  (Celera)
90
Celera pfam analysis of ensembl and celera gene sets
Pfam Analysis Of Ensembl And Celera Gene Sets, supplied by Celera, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pfam-a  (InterPro Inc)
90
InterPro Inc pfam-a
Pfam A, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pfam 01277  (InterPro Inc)
90
InterPro Inc pfam 01277
Pfam 01277, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pfam data set  (InterPro Inc)
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InterPro Inc pfam data set
Pfam Data Set, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pfam a release 9.0 domains  (InterPro Inc)
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InterPro Inc pfam a release 9.0 domains
Pfam A Release 9.0 Domains, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pfam predicted domains  (InterPro Inc)
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InterPro Inc pfam predicted domains
Pfam Predicted Domains, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pfam number pf04535  (InterPro Inc)
90
InterPro Inc pfam number pf04535
Pfam Number Pf04535, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pfam database  (InterPro Inc)
90
InterPro Inc pfam database
a The occurrence among different species was obtained from the respective <t>PFAM</t> entries available in the ‘Taxonomy’ section of <t>the</t> <t>InterPro</t> database https://www.ebi.ac.uk/interpro/entry/pfam/ (PF12822 for S-components, PF04093 for MreD proteins and PF07694 for 5TMR-containing SHKs). b The distribution of S-components, SHKs and MreDs among bacterial phyla. The analysis on the number of species refers to the release InterPro 96.0.
Pfam Database, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pfam server  (InterPro Inc)
90
InterPro Inc pfam server
a The occurrence among different species was obtained from the respective <t>PFAM</t> entries available in the ‘Taxonomy’ section of <t>the</t> <t>InterPro</t> database https://www.ebi.ac.uk/interpro/entry/pfam/ (PF12822 for S-components, PF04093 for MreD proteins and PF07694 for 5TMR-containing SHKs). b The distribution of S-components, SHKs and MreDs among bacterial phyla. The analysis on the number of species refers to the release InterPro 96.0.
Pfam Server, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/pfam server/product/InterPro Inc
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Image Search Results


a The occurrence among different species was obtained from the respective PFAM entries available in the ‘Taxonomy’ section of the InterPro database https://www.ebi.ac.uk/interpro/entry/pfam/ (PF12822 for S-components, PF04093 for MreD proteins and PF07694 for 5TMR-containing SHKs). b The distribution of S-components, SHKs and MreDs among bacterial phyla. The analysis on the number of species refers to the release InterPro 96.0.

Journal: Communications Biology

Article Title: The S-component fold: a link between bacterial transporters and receptors

doi: 10.1038/s42003-024-06295-2

Figure Lengend Snippet: a The occurrence among different species was obtained from the respective PFAM entries available in the ‘Taxonomy’ section of the InterPro database https://www.ebi.ac.uk/interpro/entry/pfam/ (PF12822 for S-components, PF04093 for MreD proteins and PF07694 for 5TMR-containing SHKs). b The distribution of S-components, SHKs and MreDs among bacterial phyla. The analysis on the number of species refers to the release InterPro 96.0.

Article Snippet: The PFAM database, now integrated in the InterPro webserver (release InterPro 96.0) , returned as results the entries PF12822 (ECF transporter, substrate-specific component), PF07694 (5TMR of 5TMR-LYT) and PF04093 (rod shape-determining protein MreD), which were then consulted on the corresponding ‘Taxonomy’ section.

Techniques:

a The organization of Energy-Coupling-Factor (ECF) transporters. The pink shaded area highlights the multiple contact points between S-component and the subunits of the ECF tripartite module. b The conservation of the AXXXA motif in helix 1, involved in the transport function of the shared membrane fold. The sequence logos illustrate the amino acid frequency corresponding to the highlighted sequence of helix 1 (red rectangle) reported for S-components, 5TMR-containing SHKs and MreD proteins on https://www.ebi.ac.uk/interpro/entry/pfam/ .

Journal: Communications Biology

Article Title: The S-component fold: a link between bacterial transporters and receptors

doi: 10.1038/s42003-024-06295-2

Figure Lengend Snippet: a The organization of Energy-Coupling-Factor (ECF) transporters. The pink shaded area highlights the multiple contact points between S-component and the subunits of the ECF tripartite module. b The conservation of the AXXXA motif in helix 1, involved in the transport function of the shared membrane fold. The sequence logos illustrate the amino acid frequency corresponding to the highlighted sequence of helix 1 (red rectangle) reported for S-components, 5TMR-containing SHKs and MreD proteins on https://www.ebi.ac.uk/interpro/entry/pfam/ .

Article Snippet: The PFAM database, now integrated in the InterPro webserver (release InterPro 96.0) , returned as results the entries PF12822 (ECF transporter, substrate-specific component), PF07694 (5TMR of 5TMR-LYT) and PF04093 (rod shape-determining protein MreD), which were then consulted on the corresponding ‘Taxonomy’ section.

Techniques: Membrane, Sequencing