Journal: The Journal of Biological Chemistry

Article Title: PGC-1? and PGC-1? Regulate Mitochondrial Density in Neurons *

doi: 10.1074/jbc.M109.018911

Figure Lengend Snippet: Effects of PGC-1 α and PGC-1 β on mitochondrial density in primary cortical neurons. Cortical neurons were transfected with plasmids expressing wild type PGC-1 coactivators or their shRNAs, GFP, and mitochondria-targeted pDsRED2 at day 2 after plating. A (expressing wild type PGC-1α) and B (expressing shRNA suppressing PGC-1α) demonstrate substantial differences in axonal mitochondrial density 3 days later. Further morphometric analysis demonstrates that axonal mitochondrial density is controlled both by PGC-1α (C) and PGC-1β (D). To estimate mitochondrial density in the neuron's body, we performed three-dimensional scan with a confocal laser microscope, followed by three-dimensional reconstruction of mitochondrial network in neuronal body. E (expressing wild type PGC-1α) and F (expressing shRNA suppressing PGC-1α) demonstrate also a clear difference in mitochondrial density in the neuronal body. Stereological analysis of three-dimensional reconstructed mitochondrial networks demonstrates a decrease of density in response of PGC-1α (G) and PGC-1β (H) suppression. *, p < 0.05; **, p < 0.01; ***, p < 0.001 versus control (one-way ANOVA followed by Newman-Keuls post hoc test).

Article Snippet: Plasmids Plasmids overexpressing PGC-1α (Addgene plasmid 10974), Gal4-PGC-1α (plasmid 8892), PGC-1β (plasmid 1031), p160 MBP (plasmid 41), p160C (plasmid 46), p67 MBP (plasmid 42), SIRT1 (plasmid 10962), SIRT1 G261A (plasmid 10963), or PGC-1α promoter-luciferase (plasmid 8887) were from ADDGENE (Cambridge, MA).

Techniques: Transfection, Expressing, shRNA, Microscopy

Journal: The Journal of Biological Chemistry

Article Title: PGC-1? and PGC-1? Regulate Mitochondrial Density in Neurons *

doi: 10.1074/jbc.M109.018911

Figure Lengend Snippet: Effects of PGC-1 α and PGC-1 β on the COX8a and COX6c promoter activity. Cortical neurons were cotransfected with plasmids expressing COX8a or COX6c promoter-luciferase reporter, Renilla luciferase, and PGC-1α or PGC-1β constructs at day 1–2 after plating. Overexpression of PGC-1α (A) or PGC-1β (B) led to increased luciferase activity performed 24 h later, suggesting increased expression of these reporter genes. Results are normalized to Renilla luciferase signal (**, p < 0.01; ***, p < 0.001 versus control, t test).

Article Snippet: Plasmids Plasmids overexpressing PGC-1α (Addgene plasmid 10974), Gal4-PGC-1α (plasmid 8892), PGC-1β (plasmid 1031), p160 MBP (plasmid 41), p160C (plasmid 46), p67 MBP (plasmid 42), SIRT1 (plasmid 10962), SIRT1 G261A (plasmid 10963), or PGC-1α promoter-luciferase (plasmid 8887) were from ADDGENE (Cambridge, MA).

Techniques: Activity Assay, Expressing, Luciferase, Construct, Over Expression

Journal: The Journal of Biological Chemistry

Article Title: PGC-1? and PGC-1? Regulate Mitochondrial Density in Neurons *

doi: 10.1074/jbc.M109.018911

Figure Lengend Snippet: Effects of PGC-1 α and PGC-1 β on the ATP level. Cortical neurons were cotransfected with plasmids expressing firefly luciferase, Renilla luciferase and PGC-1α or PGC-1β at day 2 after plating. Firefly luciferase activity was measured 24 h later, using 1-(4,5-dimethoxy-2-nitrophenyl)diazoethane-caged luciferin as a substrate, after which the neurons were lysed and Renilla luciferase was measured. Overexpression of PGC-1α and PGC-1β led to an increased firefly to Renilla luciferase activity ratio. **, p < 0.01; ***, p < 0.001 versus control (one-way ANOVA followed by Newman-Keuls post hoc test).

Article Snippet: Plasmids Plasmids overexpressing PGC-1α (Addgene plasmid 10974), Gal4-PGC-1α (plasmid 8892), PGC-1β (plasmid 1031), p160 MBP (plasmid 41), p160C (plasmid 46), p67 MBP (plasmid 42), SIRT1 (plasmid 10962), SIRT1 G261A (plasmid 10963), or PGC-1α promoter-luciferase (plasmid 8887) were from ADDGENE (Cambridge, MA).

Techniques: Expressing, Luciferase, Activity Assay, Over Expression

Journal: The Journal of Biological Chemistry

Article Title: PGC-1? and PGC-1? Regulate Mitochondrial Density in Neurons *

doi: 10.1074/jbc.M109.018911

Figure Lengend Snippet: Effects of PGC-1 α and PGC-1 β on the autophagy. Cortical neurons were transfected with plasmids expressing EGFP-LC3, mitochondria-targeted pDsRed2, and PGC-1α or PGC-1β at day 2 after plating. 3 days later, the LC3-positive dots were visualized. A, EGFP-LC3-expressing autophagosome (left), mitochondria-targeted pDsRed2 expressing mitochondria (middle), and superimposed channels to demonstrate colocalization of signals (right and below). The number of autophagosomes (B and D) as well as the number of mitochondria engulfed by autophagosomes per mm of axonal length (C and E) was unchanged in PGC-1α- or PGC-1β-overexpressing neurons. Rapamycin used as a positive control increased the number of LC3-positive mitochondria.

Article Snippet: Plasmids Plasmids overexpressing PGC-1α (Addgene plasmid 10974), Gal4-PGC-1α (plasmid 8892), PGC-1β (plasmid 1031), p160 MBP (plasmid 41), p160C (plasmid 46), p67 MBP (plasmid 42), SIRT1 (plasmid 10962), SIRT1 G261A (plasmid 10963), or PGC-1α promoter-luciferase (plasmid 8887) were from ADDGENE (Cambridge, MA).

Techniques: Transfection, Expressing, Positive Control

Journal: The Journal of Biological Chemistry

Article Title: PGC-1? and PGC-1? Regulate Mitochondrial Density in Neurons *

doi: 10.1074/jbc.M109.018911

Figure Lengend Snippet: Effects of SIRT1 and GCN5 shRNA. A–G, cortical neurons were transfected with plasmids expressing GFP and mitochondrial pDsRED2 and with different plasmids interfering with PGC-1 at day 2 after plating. A demonstrates that overexpression of SIRT1 but not its inactive mutant, SIRT G261A, increases mitochondrial density. Effect of SIRT1 disappeared in the presence of shRNA suppressing PGC-1α (B) (p < 0.001 for interaction, two-way ANOVA) but not PGC-1β (C) (p = 0.89). D demonstrates the positive effects of GCN5 suppressing shRNA that disappeared in the presence of PGC-1α shRNA (E) (p = 0.003) but not in the presence of PGC-1β shRNAs (F) (p = 0.009). G demonstrates that although combination of SIRT1 and GCN5 shRNA increased mitochondrial density more that each treatment separately; both treatments were still dependent (p = 0.008 for interaction). H and I, cortical neurons were cotransfected with Gal4-PGC-1α fusion protein, GAL4-UAS-luciferase reporter, and SIRT1 or with PGC-1α promoter reporter and SIRT1 plasmids. H demonstrates that overexpression of SIRT1 increases PGC-1α transcriptional activity whereas the activity of PGC-1α promoter reporter (I) remains unchanged (*, p < 0.05; **, p < 0.01; ***, p < 0.001 versus control; one-way ANOVA followed by Newman-Keuls post hoc test was used to compare the difference from control group, and two-way ANOVA was used to analyze the interaction between treatments).

Article Snippet: Plasmids Plasmids overexpressing PGC-1α (Addgene plasmid 10974), Gal4-PGC-1α (plasmid 8892), PGC-1β (plasmid 1031), p160 MBP (plasmid 41), p160C (plasmid 46), p67 MBP (plasmid 42), SIRT1 (plasmid 10962), SIRT1 G261A (plasmid 10963), or PGC-1α promoter-luciferase (plasmid 8887) were from ADDGENE (Cambridge, MA).

Techniques: shRNA, Transfection, Expressing, Over Expression, Mutagenesis, Luciferase, Activity Assay

Journal: The Journal of Biological Chemistry

Article Title: PGC-1? and PGC-1? Regulate Mitochondrial Density in Neurons *

doi: 10.1074/jbc.M109.018911

Figure Lengend Snippet: Effect of p160MBP. A demonstrates that overexpression of p160MBP and p67MBP but not the deletion mutant of p160MBP decreases mitochondrial density, whereas p160MBP shRNA increases it. Experiments with Gal4-PGC-1α (B) and PGC-1 promoter reporter (C) confirm that p160MBP and p67MBP regulate only PGC-1α transcriptional activity and not the expression. Effects of p160MBP overexpression/suppression disappeared in the presence of shRNA suppressing PGC-1α (D) (p < 0.011 for interaction, two-way ANOVA). Effects of p160MBP overexpression/suppression and SIRT1 were additive (E) (p = 0.45 for interaction). (*, p < 0.05; **, p < 0.01; ***, p < 0.001 versus control; one-way ANOVA followed by Newman-Keuls post hoc test).

Article Snippet: Plasmids Plasmids overexpressing PGC-1α (Addgene plasmid 10974), Gal4-PGC-1α (plasmid 8892), PGC-1β (plasmid 1031), p160 MBP (plasmid 41), p160C (plasmid 46), p67 MBP (plasmid 42), SIRT1 (plasmid 10962), SIRT1 G261A (plasmid 10963), or PGC-1α promoter-luciferase (plasmid 8887) were from ADDGENE (Cambridge, MA).

Techniques: Over Expression, Mutagenesis, shRNA, Activity Assay, Expressing

Journal: The Journal of Biological Chemistry

Article Title: PGC-1? and PGC-1? Regulate Mitochondrial Density in Neurons *

doi: 10.1074/jbc.M109.018911

Figure Lengend Snippet: PGC-1 α, PGC-1 β, and SIRT1 overexpression and GCN5 suppression protect against mitochondrial loss. Cortical neurons were transfected with plasmids expressing A53T-mutated α-synuclein or 120Q huntingtin, GFP, or mitochondrial pDsRED2 and with different plasmids modulating expression or activity of PGC-1 coactivators. A and B demonstrate that PGC-1α and PGC-1β protect against A53T-mutated α-synuclein or 120Q huntingtin-induced mitochondrial loss, respectively. C and D demonstrate that also SIRT1 and GCN5 shRNA protect against A53T-mutated α-synuclein or 120Q huntingtin-induced mitochondrial loss, respectively. E and F demonstrate that overexpression of PGC-1α and SIRT1 protect also against A53T α-synuclein or 120Q huntingtin-induced neuronal death, respectively (*, p < 0.05; **, p < 0.01; ***, p < 0.001 versus control; one-way ANOVA followed by Newman-Keuls post hoc test).

Article Snippet: Plasmids Plasmids overexpressing PGC-1α (Addgene plasmid 10974), Gal4-PGC-1α (plasmid 8892), PGC-1β (plasmid 1031), p160 MBP (plasmid 41), p160C (plasmid 46), p67 MBP (plasmid 42), SIRT1 (plasmid 10962), SIRT1 G261A (plasmid 10963), or PGC-1α promoter-luciferase (plasmid 8887) were from ADDGENE (Cambridge, MA).

Techniques: Over Expression, Transfection, Expressing, Activity Assay, shRNA

Journal: eLife

Article Title: Globally defining the effects of mutations in a picornavirus capsid

doi: 10.7554/eLife.64256

Figure Lengend Snippet:

Article Snippet: Recombinant DNA reagent , HA-ZC3HAV1 , Addgene , RRID: Addgene_45907 , HA-ZC3HAV1 expression plasmid.

Techniques: Virus, Cloning, Infection, Western Blot, Recombinant, Plasmid Preparation, Clone Assay, Mutagenesis, Transfection, Expressing, Sequencing, In Vitro, Purification, DNA Purification, Gel Purification, Protease Inhibitor, Software, Next-Generation Sequencing, Selection, In Silico, Molecular Weight