palmtracer software plugin for Search Results


palmtracer plugin  (MetaMorph Inc)
90
MetaMorph Inc palmtracer plugin
Super resolution cluster analysis of a protein of interest in synaptic sub compartments in <t>PALMTracer</t> <t>plugin</t> supported by MetaMorph software (A and B) Steps to open PALMTracer plugin running inside MetaMorph software. (C) Data and options tab of PALMTracer showing the parameters employed for cluster analysis. (D) Super resolution image of a protein of interest (STED APP) opened in MetaMorph loaded with regions from STED PSD95 image. The boundaries of the regions are indicated in yellow color. (E and F) Filtering and special tab of PALMTracer showing the parameters employed for cluster analysis.
Palmtracer Plugin, supplied by MetaMorph Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/palmtracer+software+plugin+for/pmc08076707-331-26-30?v=MetaMorph+Inc
Average 90 stars, based on 1 article reviews
palmtracer plugin - by Bioz Stars, 2026-08
90/100 stars
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Super resolution cluster analysis of a protein of interest in synaptic sub compartments in PALMTracer plugin supported by MetaMorph software (A and B) Steps to open PALMTracer plugin running inside MetaMorph software. (C) Data and options tab of PALMTracer showing the parameters employed for cluster analysis. (D) Super resolution image of a protein of interest (STED APP) opened in MetaMorph loaded with regions from STED PSD95 image. The boundaries of the regions are indicated in yellow color. (E and F) Filtering and special tab of PALMTracer showing the parameters employed for cluster analysis.

Journal: STAR Protocols

Article Title: Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons

doi: 10.1016/j.xpro.2021.100470

Figure Lengend Snippet: Super resolution cluster analysis of a protein of interest in synaptic sub compartments in PALMTracer plugin supported by MetaMorph software (A and B) Steps to open PALMTracer plugin running inside MetaMorph software. (C) Data and options tab of PALMTracer showing the parameters employed for cluster analysis. (D) Super resolution image of a protein of interest (STED APP) opened in MetaMorph loaded with regions from STED PSD95 image. The boundaries of the regions are indicated in yellow color. (E and F) Filtering and special tab of PALMTracer showing the parameters employed for cluster analysis.

Article Snippet: Super resolution cluster analysis of a protein of interest in synaptic sub compartments in PALMTracer plugin supported by MetaMorph software (A and B) Steps to open PALMTracer plugin running inside MetaMorph software. (C) Data and options tab of PALMTracer showing the parameters employed for cluster analysis. (D) Super resolution image of a protein of interest (STED APP) opened in MetaMorph loaded with regions from STED PSD95 image.

Techniques: Software

Troubleshooting PALMTracer super resolution cluster analysis (A–C) Pseudocolor image of APP obtained using STED microscopy loaded in MetaMorph software. The intensity is color coded from white (minimum) to black (maximum). (D–F) Different ROI sizes opted for the Gaussian fitting of the clusters in the special tab of PALMTracer plugin supported by MetaMorph software. The ROI size in (D) is 14, in (E) is 2 and in (F) is 7. The ROIs are indicated by black contours in (A–C). (G and H) Pseudocolor STED image of a protein of interest with an image depth of 8 bits loaded in the MetaMorph software and analyzed for clusters through PALMTracer plugin. The detected nanodomain regions are indicated in black. (I) Error message by PALMTracer during super resolution cluster analysis.

Journal: STAR Protocols

Article Title: Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons

doi: 10.1016/j.xpro.2021.100470

Figure Lengend Snippet: Troubleshooting PALMTracer super resolution cluster analysis (A–C) Pseudocolor image of APP obtained using STED microscopy loaded in MetaMorph software. The intensity is color coded from white (minimum) to black (maximum). (D–F) Different ROI sizes opted for the Gaussian fitting of the clusters in the special tab of PALMTracer plugin supported by MetaMorph software. The ROI size in (D) is 14, in (E) is 2 and in (F) is 7. The ROIs are indicated by black contours in (A–C). (G and H) Pseudocolor STED image of a protein of interest with an image depth of 8 bits loaded in the MetaMorph software and analyzed for clusters through PALMTracer plugin. The detected nanodomain regions are indicated in black. (I) Error message by PALMTracer during super resolution cluster analysis.

Article Snippet: Super resolution cluster analysis of a protein of interest in synaptic sub compartments in PALMTracer plugin supported by MetaMorph software (A and B) Steps to open PALMTracer plugin running inside MetaMorph software. (C) Data and options tab of PALMTracer showing the parameters employed for cluster analysis. (D) Super resolution image of a protein of interest (STED APP) opened in MetaMorph loaded with regions from STED PSD95 image.

Techniques: Microscopy, Software

Journal: STAR Protocols

Article Title: Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons

doi: 10.1016/j.xpro.2021.100470

Figure Lengend Snippet:

Article Snippet: Super resolution cluster analysis of a protein of interest in synaptic sub compartments in PALMTracer plugin supported by MetaMorph software (A and B) Steps to open PALMTracer plugin running inside MetaMorph software. (C) Data and options tab of PALMTracer showing the parameters employed for cluster analysis. (D) Super resolution image of a protein of interest (STED APP) opened in MetaMorph loaded with regions from STED PSD95 image.

Techniques: Recombinant, Software, Cell Culture, Inverted Microscopy