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Image Search Results
Journal: Current protocols in molecular biology
Article Title: Current Protocols in Molecular Biology For Chapter 29 Ms#CP-16-0221 Automated computational processing of 3D MR images of mouse brain for phenotyping of living animals
doi: 10.1002/cpmb.40
Figure Lengend Snippet: Our SkullStrip program, skullstripper.py, takes a reference template image of a whole head together with and its respective mask (yellow, left panels) and warps the template mask to fit a new, target head image (gray, middle panel). Output of the computer-generated mask and its overlay on the new target image shows the precise fit this process produces (red, right panels).
Article Snippet: To do this, we can use either
Techniques: Generated
Journal: Current protocols in molecular biology
Article Title: Current Protocols in Molecular Biology For Chapter 29 Ms#CP-16-0221 Automated computational processing of 3D MR images of mouse brain for phenotyping of living animals
doi: 10.1002/cpmb.40
Figure Lengend Snippet: This shows the results of the SkullStrip program, skullstripper.py, to mask the extra-meningeal tissue in the whole head image. This is the final results after following steps A1-A8. (A) A new whole-head image. (B) The mask generated by skullstripper.py and thresholded to produce a black-white image derived from the reference image and reference mask and warped to fit the image in (A). (C) Application of the mask to the whole head image cause the non-brain tissues to disappear from the image because they are masked out. This resultant image is shown here as a sincle axial slice. However, the mask must fit in all three orthogonal dimensions and must be checked in a 3D viewer in each coronal, axial, and sagittal slice across the whole brain.
Article Snippet: To do this, we can use either
Techniques: Generated, Derivative Assay