Journal: BMC Genomics

Article Title: Deep sequencing of transcriptomes from the nervous systems of two decapod crustaceans to characterize genes important for neural circuit function and modulation

doi: 10.1186/s12864-016-3215-z

Figure Lengend Snippet: Overview of transcriptome assembly statistics for C. borealis and H. americanus

Article Snippet: The C. borealis metrics were C: 59.0 %, F: 13.5 %, and M: 27.5 % for the CLC Genomics assembly and C: 58.4 %, F: 20.1 %, and M: 21.5 % for the SeqMan NGen assembly.

Techniques:

Journal: BMC Genomics

Article Title: Deep sequencing of transcriptomes from the nervous systems of two decapod crustaceans to characterize genes important for neural circuit function and modulation

doi: 10.1186/s12864-016-3215-z

Figure Lengend Snippet: Length distribution of the de novo assemblies and annotation coverage of the C. borealis and H. americanus transcriptomes. a Size distribution of contigs shown for two different de novo assemblies of the C. borealis and H. americanus nervous system transcriptomes. Each assembly is shown individually, and overlaid contig lengths are shown in the right panels . Assembly statistics are shown in Table . b Horizontal stacked bar plots showing proportions of gene sets in BUSCO quality categories for the 4 different assemblies shown in panel A (CLC and SeqMan NGen, noted in bold ). A previously published nervous system transcriptome from H. americanus (denoted by *) is also provided for comparison . Quality categories are as follows: i) Complete BUSCOs: genes that match a single gene in the BUSCO reference group; ii) Fragmented BUSCOs: genes only partially recovered with gene length exceeding alignment length cut-off; iii) Missing BUSCOs: non-recovered genes

Article Snippet: The C. borealis metrics were C: 59.0 %, F: 13.5 %, and M: 27.5 % for the CLC Genomics assembly and C: 58.4 %, F: 20.1 %, and M: 21.5 % for the SeqMan NGen assembly.

Techniques: