nanopore genome sequencing Search Results


buffer kits illumina 20034198 high molecular weight genomic dna kit qiagen 67563 ligation sequencing kit  (Oxford Nanopore)
97
Oxford Nanopore buffer kits illumina 20034198 high molecular weight genomic dna kit qiagen 67563 ligation sequencing kit
Buffer Kits Illumina 20034198 High Molecular Weight Genomic Dna Kit Qiagen 67563 Ligation Sequencing Kit, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/nanopore+genome+sequencing/Ligation+Sequencing+Kit/pm34995483-229-104-123
Average 97 stars, based on 1 article reviews
buffer kits illumina 20034198 high molecular weight genomic dna kit qiagen 67563 ligation sequencing kit - by Bioz Stars, 2026-09
97/100 stars
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genomic dna sequencing kit map 004  (Oxford Nanopore)
97
Oxford Nanopore genomic dna sequencing kit map 004
Genomic Dna Sequencing Kit Map 004, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/nanopore+genome+sequencing/Ligation+Sequencing+Kit/bio_rxiv__028290-111-25-30
Average 97 stars, based on 1 article reviews
genomic dna sequencing kit map 004 - by Bioz Stars, 2026-09
97/100 stars
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artic sars-cov-2 ont sequencing protocol  (Oxford Nanopore)
90
Oxford Nanopore artic sars-cov-2 ont sequencing protocol
Artic Sars Cov 2 Ont Sequencing Protocol, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/nanopore+genome+sequencing/sars+cov+2+whole+genome+sequencing/pm35365787-141-8-11
Average 90 stars, based on 1 article reviews
artic sars-cov-2 ont sequencing protocol - by Bioz Stars, 2026-09
90/100 stars
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genomic oxford nanopore reads  (Oxford Nanopore)
90
Oxford Nanopore genomic oxford nanopore reads
Comparison between randstrobes, mixed-randstrobes and k -mers when mapping genomic Oxford <t>Nanopore</t> Technology (ONT) reads from E.coli to its reference. The E.coli reads were split up in long disjoint segments of 2,000nt. Next, the segments were seeded with strobemer fractions from 0% ( k -mers) to 100% (randstrobes), downstream windows set to [ , ] and all strobes combined adding up to equal length subsequences of size 30 for better comparison. Then for each segment, the collinear solution of raw hits was computed to subsequently quantify number of matches, match <t>coverage,</t> <t>sequence</t> coverage and expected island size.
Genomic Oxford Nanopore Reads, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/nanopore+genome+sequencing/genomic+sequencing/bio_rxiv__2022__10__13__512198-223-25-26
Average 90 stars, based on 1 article reviews
genomic oxford nanopore reads - by Bioz Stars, 2026-09
90/100 stars
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minion genome sequencer  (Oxford Nanopore)
90
Oxford Nanopore minion genome sequencer
Readcount for the <t>MinION</t> (Oxford Nanopore Technologies (ONT)) dataset and read taxonomy classification of 2D reads, when sequencing the 2016 WHO <t>Neisseria</t> <t>gonorrhoeae</t> reference strains (n=14) and 14 clinical N. gonorrhoeae isolates. Percentage within each bar represents the proportion of reads classified as N. gonorrhoeae. The number above each bar represents the number of reads that were classified.
Minion Genome Sequencer, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/nanopore+genome+sequencing/minion+genome+sequencer/bio_rxiv__349316-33-39-37
Average 90 stars, based on 1 article reviews
minion genome sequencer - by Bioz Stars, 2026-09
90/100 stars
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hybrid genomes using nanopore sequences  (DOE Systems Biology Knowledgebase)
90
DOE Systems Biology Knowledgebase hybrid genomes using nanopore sequences
Readcount for the <t>MinION</t> (Oxford Nanopore Technologies (ONT)) dataset and read taxonomy classification of 2D reads, when sequencing the 2016 WHO <t>Neisseria</t> <t>gonorrhoeae</t> reference strains (n=14) and 14 clinical N. gonorrhoeae isolates. Percentage within each bar represents the proportion of reads classified as N. gonorrhoeae. The number above each bar represents the number of reads that were classified.
Hybrid Genomes Using Nanopore Sequences, supplied by DOE Systems Biology Knowledgebase, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/nanopore+genome+sequencing/hybrid+genomes+using+nanopore+sequences/pmc11237616-24-5-10
Average 90 stars, based on 1 article reviews
hybrid genomes using nanopore sequences - by Bioz Stars, 2026-09
90/100 stars
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genomic dna sequencing  (Oxford Nanopore)
90
Oxford Nanopore genomic dna sequencing
Readcount for the <t>MinION</t> (Oxford Nanopore Technologies (ONT)) dataset and read taxonomy classification of 2D reads, when sequencing the 2016 WHO <t>Neisseria</t> <t>gonorrhoeae</t> reference strains (n=14) and 14 clinical N. gonorrhoeae isolates. Percentage within each bar represents the proportion of reads classified as N. gonorrhoeae. The number above each bar represents the number of reads that were classified.
Genomic Dna Sequencing, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/nanopore+genome+sequencing/genomic+dna+sequencing/bio_rxiv__2020__10__08__330514-50-16-14
Average 90 stars, based on 1 article reviews
genomic dna sequencing - by Bioz Stars, 2026-09
90/100 stars
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long-read genome sequencing  (Oxford Nanopore)
90
Oxford Nanopore long-read genome sequencing
Readcount for the <t>MinION</t> (Oxford Nanopore Technologies (ONT)) dataset and read taxonomy classification of 2D reads, when sequencing the 2016 WHO <t>Neisseria</t> <t>gonorrhoeae</t> reference strains (n=14) and 14 clinical N. gonorrhoeae isolates. Percentage within each bar represents the proportion of reads classified as N. gonorrhoeae. The number above each bar represents the number of reads that were classified.
Long Read Genome Sequencing, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/nanopore+genome+sequencing/long+read+whole+genome+sequencing/pmc11513043-300-5-14
Average 90 stars, based on 1 article reviews
long-read genome sequencing - by Bioz Stars, 2026-09
90/100 stars
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whole-genome sequencing  (Oxford Nanopore)
90
Oxford Nanopore whole-genome sequencing
Readcount for the <t>MinION</t> (Oxford Nanopore Technologies (ONT)) dataset and read taxonomy classification of 2D reads, when sequencing the 2016 WHO <t>Neisseria</t> <t>gonorrhoeae</t> reference strains (n=14) and 14 clinical N. gonorrhoeae isolates. Percentage within each bar represents the proportion of reads classified as N. gonorrhoeae. The number above each bar represents the number of reads that were classified.
Whole Genome Sequencing, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/nanopore+genome+sequencing/whole+genome+sequencing/pmc08471669-47-34-31
Average 90 stars, based on 1 article reviews
whole-genome sequencing - by Bioz Stars, 2026-09
90/100 stars
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whole-genome viral sequencing  (Oxford Nanopore)
90
Oxford Nanopore whole-genome viral sequencing
Readcount for the <t>MinION</t> (Oxford Nanopore Technologies (ONT)) dataset and read taxonomy classification of 2D reads, when sequencing the 2016 WHO <t>Neisseria</t> <t>gonorrhoeae</t> reference strains (n=14) and 14 clinical N. gonorrhoeae isolates. Percentage within each bar represents the proportion of reads classified as N. gonorrhoeae. The number above each bar represents the number of reads that were classified.
Whole Genome Viral Sequencing, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/nanopore+genome+sequencing/whole+genome+viral+sequencing/pmc10060887-92-15-19
Average 90 stars, based on 1 article reviews
whole-genome viral sequencing - by Bioz Stars, 2026-09
90/100 stars
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whole-genome shotgun sequence reads  (Oxford Nanopore)
90
Oxford Nanopore whole-genome shotgun sequence reads
Readcount for the <t>MinION</t> (Oxford Nanopore Technologies (ONT)) dataset and read taxonomy classification of 2D reads, when sequencing the 2016 WHO <t>Neisseria</t> <t>gonorrhoeae</t> reference strains (n=14) and 14 clinical N. gonorrhoeae isolates. Percentage within each bar represents the proportion of reads classified as N. gonorrhoeae. The number above each bar represents the number of reads that were classified.
Whole Genome Shotgun Sequence Reads, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/nanopore+genome+sequencing/sequencing+genomes/pmc07509475__giaa100_giga___d___20___00167_revision_1-265-3-0
Average 90 stars, based on 1 article reviews
whole-genome shotgun sequence reads - by Bioz Stars, 2026-09
90/100 stars
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genome sequencing tools  (Oxford Nanopore)
90
Oxford Nanopore genome sequencing tools
Readcount for the <t>MinION</t> (Oxford Nanopore Technologies (ONT)) dataset and read taxonomy classification of 2D reads, when sequencing the 2016 WHO <t>Neisseria</t> <t>gonorrhoeae</t> reference strains (n=14) and 14 clinical N. gonorrhoeae isolates. Percentage within each bar represents the proportion of reads classified as N. gonorrhoeae. The number above each bar represents the number of reads that were classified.
Genome Sequencing Tools, supplied by Oxford Nanopore, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/nanopore+genome+sequencing/genome+sequencing+tools/pmc08662319-27-20-5
Average 90 stars, based on 1 article reviews
genome sequencing tools - by Bioz Stars, 2026-09
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Image Search Results


Comparison between randstrobes, mixed-randstrobes and k -mers when mapping genomic Oxford Nanopore Technology (ONT) reads from E.coli to its reference. The E.coli reads were split up in long disjoint segments of 2,000nt. Next, the segments were seeded with strobemer fractions from 0% ( k -mers) to 100% (randstrobes), downstream windows set to [ , ] and all strobes combined adding up to equal length subsequences of size 30 for better comparison. Then for each segment, the collinear solution of raw hits was computed to subsequently quantify number of matches, match coverage, sequence coverage and expected island size.

Journal: bioRxiv

Article Title: Entropy predicts fuzzy-seed sensitivity

doi: 10.1101/2022.10.13.512198

Figure Lengend Snippet: Comparison between randstrobes, mixed-randstrobes and k -mers when mapping genomic Oxford Nanopore Technology (ONT) reads from E.coli to its reference. The E.coli reads were split up in long disjoint segments of 2,000nt. Next, the segments were seeded with strobemer fractions from 0% ( k -mers) to 100% (randstrobes), downstream windows set to [ , ] and all strobes combined adding up to equal length subsequences of size 30 for better comparison. Then for each segment, the collinear solution of raw hits was computed to subsequently quantify number of matches, match coverage, sequence coverage and expected island size.

Article Snippet: We used the sequence match analysis performed in [ ], where several different aspects of sequence matching performance were evaluated, using both the simulations and genomic Oxford nanopore reads from [ ].

Techniques: Comparison, Sequencing

Readcount for the MinION (Oxford Nanopore Technologies (ONT)) dataset and read taxonomy classification of 2D reads, when sequencing the 2016 WHO Neisseria gonorrhoeae reference strains (n=14) and 14 clinical N. gonorrhoeae isolates. Percentage within each bar represents the proportion of reads classified as N. gonorrhoeae. The number above each bar represents the number of reads that were classified.

Journal: bioRxiv

Article Title: Oxford Nanopore MinION genome sequencer: performance characteristics, optimised analysis workflow, phylogenetic analysis and prediction of antimicrobial resistance in Neisseria gonorrhoeae

doi: 10.1101/349316

Figure Lengend Snippet: Readcount for the MinION (Oxford Nanopore Technologies (ONT)) dataset and read taxonomy classification of 2D reads, when sequencing the 2016 WHO Neisseria gonorrhoeae reference strains (n=14) and 14 clinical N. gonorrhoeae isolates. Percentage within each bar represents the proportion of reads classified as N. gonorrhoeae. The number above each bar represents the number of reads that were classified.

Article Snippet: We evaluated the performance characteristics, ideal sequence analysis (tools and workflow for taxonomy, assembly, assembly improvement (“polishing”) and mapping), phylogenomic analysis, and prediction of decreased susceptibility or resistance to recommended therapeutic antimicrobials in N. gonorrhoeae using the Oxford Nanopore MinION genome sequencer.

Techniques: Sequencing

Overview of the number of MinION (Oxford Nanopore Technologies (ONT)) 2D reads and the mapability of the reads to the genome of the Neisseria gonorrhoeae reference strain FA1090, when sequencing the 2016 WHO N. gonorrhoeae reference strains (n=14) and 14 clinical N. gonorrhoeae isolates.

Journal: bioRxiv

Article Title: Oxford Nanopore MinION genome sequencer: performance characteristics, optimised analysis workflow, phylogenetic analysis and prediction of antimicrobial resistance in Neisseria gonorrhoeae

doi: 10.1101/349316

Figure Lengend Snippet: Overview of the number of MinION (Oxford Nanopore Technologies (ONT)) 2D reads and the mapability of the reads to the genome of the Neisseria gonorrhoeae reference strain FA1090, when sequencing the 2016 WHO N. gonorrhoeae reference strains (n=14) and 14 clinical N. gonorrhoeae isolates.

Article Snippet: We evaluated the performance characteristics, ideal sequence analysis (tools and workflow for taxonomy, assembly, assembly improvement (“polishing”) and mapping), phylogenomic analysis, and prediction of decreased susceptibility or resistance to recommended therapeutic antimicrobials in N. gonorrhoeae using the Oxford Nanopore MinION genome sequencer.

Techniques: Sequencing

(A) Phylogenetic tree of the genome sequences of the 2016 WHO N. gonorrhoeae reference strains (n=14) and clinical gonococcal isolates (n=14) sequenced with Illumina MiSeq and MinION (Oxford Nanopore Technologies (ONT)). The tree uses using the genome of the N. gonorrhoeae reference strain FA1090 as reference (shown with black bar). The platform used, number of reads, average read length, and number of single nucleotide polymorphisms (SNPs) are displayed as colored bars next to each node in the tree. The numbers inside the SNP-bars is the pairwise distance between the Illumina and ONT sequences. (B) Tanglegram to compare the phylogenetic networks based on sequencing using Illumina technology (left hand side) and Oxford Nanopore technology (right hand side).

Journal: bioRxiv

Article Title: Oxford Nanopore MinION genome sequencer: performance characteristics, optimised analysis workflow, phylogenetic analysis and prediction of antimicrobial resistance in Neisseria gonorrhoeae

doi: 10.1101/349316

Figure Lengend Snippet: (A) Phylogenetic tree of the genome sequences of the 2016 WHO N. gonorrhoeae reference strains (n=14) and clinical gonococcal isolates (n=14) sequenced with Illumina MiSeq and MinION (Oxford Nanopore Technologies (ONT)). The tree uses using the genome of the N. gonorrhoeae reference strain FA1090 as reference (shown with black bar). The platform used, number of reads, average read length, and number of single nucleotide polymorphisms (SNPs) are displayed as colored bars next to each node in the tree. The numbers inside the SNP-bars is the pairwise distance between the Illumina and ONT sequences. (B) Tanglegram to compare the phylogenetic networks based on sequencing using Illumina technology (left hand side) and Oxford Nanopore technology (right hand side).

Article Snippet: We evaluated the performance characteristics, ideal sequence analysis (tools and workflow for taxonomy, assembly, assembly improvement (“polishing”) and mapping), phylogenomic analysis, and prediction of decreased susceptibility or resistance to recommended therapeutic antimicrobials in N. gonorrhoeae using the Oxford Nanopore MinION genome sequencer.

Techniques: Sequencing