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Image Search Results
Journal: Genome Biology and Evolution
Article Title: High-throughput Selection of Human de novo -emerged sORFs with High Folding Potential
doi: 10.1093/gbe/evae069
Figure Lengend Snippet: Workflow: a) We selected 3,750 de novo emerged human sequences from the sORFs database and generated a library of comparable random sequences. Protein structure properties were predicted computationally. After ordering the libraries as oligonucleotides they were cloned into the pETMF plasmid and transformed into E. coli for the FRET-FACS assay. b) The FACS was performed in two sequential rounds for both libraries separately. Presorted cells containing single library sequences were sorted into FRET-positive (on the left in green) and FRET-negative (on the right in red) samples. Samples with * were recovered, sent for next-generation sequencing (NGS) and used for enrichment analysis. c) The library sORF proteins (gray) are tagged with fluorescent proteins (FP) mVenus (acceptor FP in yellow) and mTurquoise2 (donor FP in blue) on the termini with GGS spacers. Compact library sORF proteins place the fluorescent proteins in close proximity and are expected to cause FRET. Disordered or fibrillar library proteins are expected to be FRET-negative. d) The presorted samples contain all library protein structures. The first round is expected to result in separation of compact and disordered structures, which becomes more pronounced in the second round. The FRET-negative proteins should have an increased N- to C-terminal distance and disorder, while the FRET-positive proteins show increased compactness and folding. Made with BioRender.
Article Snippet: Plasmid harboring mVenus was obtained from Addgene (catalogue no.: 103,986) and
Techniques: Generated, Clone Assay, Plasmid Preparation, Transformation Assay, Next-Generation Sequencing
Journal: Genome Biology and Evolution
Article Title: High-throughput Selection of Human de novo -emerged sORFs with High Folding Potential
doi: 10.1093/gbe/evae069
Figure Lengend Snippet: Fluorescence Lifetime of Different Control Proteins Measured in vivo
Article Snippet: Plasmid harboring mVenus was obtained from Addgene (catalogue no.: 103,986) and
Techniques: Fluorescence, Control