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metabolic model reconstruction algorithm  (Coreco Inc)
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Coreco Inc metabolic model reconstruction algorithm
<t>CoReCo</t> <t>metabolic</t> <t>model</t> <t>reconstruction</t> pipeline. The <t>algorithm</t> has three main inputs: (1) genomes of the organisms (set of proteins), (2) phylogeny of the organisms, and (3) reaction database containing lists of metabolic reactions, reaction directionalities, and sequences of the enzymes catalyzing the reactions
Metabolic Model Reconstruction Algorithm, supplied by Coreco Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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CoReCo metabolic model reconstruction pipeline. The algorithm has three main inputs: (1) genomes of the organisms (set of proteins), (2) phylogeny of the organisms, and (3) reaction database containing lists of metabolic reactions, reaction directionalities, and sequences of the enzymes catalyzing the reactions

Journal: Biotechnology for Biofuels

Article Title: Whole-genome metabolic model of Trichoderma reesei built by comparative reconstruction

doi: 10.1186/s13068-016-0665-0

Figure Lengend Snippet: CoReCo metabolic model reconstruction pipeline. The algorithm has three main inputs: (1) genomes of the organisms (set of proteins), (2) phylogeny of the organisms, and (3) reaction database containing lists of metabolic reactions, reaction directionalities, and sequences of the enzymes catalyzing the reactions

Article Snippet: A whole-genome metabolic model of T. reesei has been reconstructed together with metabolic models of 55 related species using the metabolic model reconstruction algorithm CoReCo.

Techniques:

Example illustrating the benefit of adding reaction directions to the CoReCo gapless reconstruction step and improving the reaction database. The reactions that contain a T. reesei gene annotation in KEGG are colored blue . The reactions wrongly added in our previous metabolic model version for the production of zymosterol are colored red . The model presented in this work contains only the reactions colored blue and yellow

Journal: Biotechnology for Biofuels

Article Title: Whole-genome metabolic model of Trichoderma reesei built by comparative reconstruction

doi: 10.1186/s13068-016-0665-0

Figure Lengend Snippet: Example illustrating the benefit of adding reaction directions to the CoReCo gapless reconstruction step and improving the reaction database. The reactions that contain a T. reesei gene annotation in KEGG are colored blue . The reactions wrongly added in our previous metabolic model version for the production of zymosterol are colored red . The model presented in this work contains only the reactions colored blue and yellow

Article Snippet: A whole-genome metabolic model of T. reesei has been reconstructed together with metabolic models of 55 related species using the metabolic model reconstruction algorithm CoReCo.

Techniques:

Comparison of the previously reconstructed models [ <xref ref-type= 21 ] with the new models produced by CoReCo in this article" width="100%" height="100%">

Journal: Biotechnology for Biofuels

Article Title: Whole-genome metabolic model of Trichoderma reesei built by comparative reconstruction

doi: 10.1186/s13068-016-0665-0

Figure Lengend Snippet: Comparison of the previously reconstructed models [ 21 ] with the new models produced by CoReCo in this article

Article Snippet: A whole-genome metabolic model of T. reesei has been reconstructed together with metabolic models of 55 related species using the metabolic model reconstruction algorithm CoReCo.

Techniques: Comparison, Produced