macros in imagej Search Results


imagej macro  (Brainz Instruments UK Ltd)
90
Brainz Instruments UK Ltd imagej macro
Workflow of a semi-automated <t>ImageJ</t> <t>macro</t> used to quantify invasion into ex vivo brain slice cultures. This ImageJ macro is comprised of 9 semi-automated steps for analyzing the number of particles, area of each particle, and distance of each particle from the nearest edge of the spheroid. (i) A raw image is split into individual channels and (ii) the GFP only channel is converted to an 8-bit image (iii). The ImageJ macro then starts by creating a mask of the binary image (iv) and the software places an ellipse over the core of the spheroid, which can be adjusted if necessary to capture the edge of the spheroid (v). The ellipse is subtracted from the image (vi) and particles outside of the spheroid core are watershed (vii). Finally, a colour map (viii) is used by the software to calculate the distance of each particle from the nearest edge of the ellipse (ix) as well as the area of each particle.
Imagej Macro, supplied by Brainz Instruments UK Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/macros+in+imagej/imagej+macro/pmc09923402-12-1-3
Average 90 stars, based on 1 article reviews
imagej macro - by Bioz Stars, 2026-11
90/100 stars
  Buy from Supplier
gfp-lc3  (MetaMorph Inc)
90
MetaMorph Inc gfp-lc3
Workflow of a semi-automated <t>ImageJ</t> <t>macro</t> used to quantify invasion into ex vivo brain slice cultures. This ImageJ macro is comprised of 9 semi-automated steps for analyzing the number of particles, area of each particle, and distance of each particle from the nearest edge of the spheroid. (i) A raw image is split into individual channels and (ii) the GFP only channel is converted to an 8-bit image (iii). The ImageJ macro then starts by creating a mask of the binary image (iv) and the software places an ellipse over the core of the spheroid, which can be adjusted if necessary to capture the edge of the spheroid (v). The ellipse is subtracted from the image (vi) and particles outside of the spheroid core are watershed (vii). Finally, a colour map (viii) is used by the software to calculate the distance of each particle from the nearest edge of the ellipse (ix) as well as the area of each particle.
Gfp Lc3, supplied by MetaMorph Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/macros+in+imagej/nih+imagej+macro+gfp+lc3/pmc02669321-160-69-27
Average 90 stars, based on 1 article reviews
gfp-lc3 - by Bioz Stars, 2026-11
90/100 stars
  Buy from Supplier
custom imagej macros  (wavemetrics inc)
90
wavemetrics inc custom imagej macros
Workflow of a semi-automated <t>ImageJ</t> <t>macro</t> used to quantify invasion into ex vivo brain slice cultures. This ImageJ macro is comprised of 9 semi-automated steps for analyzing the number of particles, area of each particle, and distance of each particle from the nearest edge of the spheroid. (i) A raw image is split into individual channels and (ii) the GFP only channel is converted to an 8-bit image (iii). The ImageJ macro then starts by creating a mask of the binary image (iv) and the software places an ellipse over the core of the spheroid, which can be adjusted if necessary to capture the edge of the spheroid (v). The ellipse is subtracted from the image (vi) and particles outside of the spheroid core are watershed (vii). Finally, a colour map (viii) is used by the software to calculate the distance of each particle from the nearest edge of the ellipse (ix) as well as the area of each particle.
Custom Imagej Macros, supplied by wavemetrics inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/macros+in+imagej/custom+imagej+macros/pmc09887718-570-13-18
Average 90 stars, based on 1 article reviews
custom imagej macros - by Bioz Stars, 2026-11
90/100 stars
  Buy from Supplier
fiji imagej  (Visikol inc)
90
Visikol inc fiji imagej
Workflow of a semi-automated <t>ImageJ</t> <t>macro</t> used to quantify invasion into ex vivo brain slice cultures. This ImageJ macro is comprised of 9 semi-automated steps for analyzing the number of particles, area of each particle, and distance of each particle from the nearest edge of the spheroid. (i) A raw image is split into individual channels and (ii) the GFP only channel is converted to an 8-bit image (iii). The ImageJ macro then starts by creating a mask of the binary image (iv) and the software places an ellipse over the core of the spheroid, which can be adjusted if necessary to capture the edge of the spheroid (v). The ellipse is subtracted from the image (vi) and particles outside of the spheroid core are watershed (vii). Finally, a colour map (viii) is used by the software to calculate the distance of each particle from the nearest edge of the ellipse (ix) as well as the area of each particle.
Fiji Imagej, supplied by Visikol inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/macros+in+imagej/imagej+macro+code/pmc10526111-81-33-20
Average 90 stars, based on 1 article reviews
fiji imagej - by Bioz Stars, 2026-11
90/100 stars
  Buy from Supplier
imagej macros and functions  (Thermimage Inc)
90
Thermimage Inc imagej macros and functions
Workflow of a semi-automated <t>ImageJ</t> <t>macro</t> used to quantify invasion into ex vivo brain slice cultures. This ImageJ macro is comprised of 9 semi-automated steps for analyzing the number of particles, area of each particle, and distance of each particle from the nearest edge of the spheroid. (i) A raw image is split into individual channels and (ii) the GFP only channel is converted to an 8-bit image (iii). The ImageJ macro then starts by creating a mask of the binary image (iv) and the software places an ellipse over the core of the spheroid, which can be adjusted if necessary to capture the edge of the spheroid (v). The ellipse is subtracted from the image (vi) and particles outside of the spheroid core are watershed (vii). Finally, a colour map (viii) is used by the software to calculate the distance of each particle from the nearest edge of the ellipse (ix) as well as the area of each particle.
Imagej Macros And Functions, supplied by Thermimage Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/macros+in+imagej/imagej+macros+and+functions/pm32716861-94-17-29
Average 90 stars, based on 1 article reviews
imagej macros and functions - by Bioz Stars, 2026-11
90/100 stars
  Buy from Supplier
knip imagej macro node  (KNIME GmbH)
90
KNIME GmbH knip imagej macro node
KEY RESOURCES TABLE
Knip Imagej Macro Node, supplied by KNIME GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/macros+in+imagej/knip+imagej+macro+node/pmc06754282-685-4-10
Average 90 stars, based on 1 article reviews
knip imagej macro node - by Bioz Stars, 2026-11
90/100 stars
  Buy from Supplier
imagej macros  (Wageningen University and Research)
90
Wageningen University and Research imagej macros
KEY RESOURCES TABLE
Imagej Macros, supplied by Wageningen University and Research, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/macros+in+imagej/imagej+macros/pm37683039-272-83-105
Average 90 stars, based on 1 article reviews
imagej macros - by Bioz Stars, 2026-11
90/100 stars
  Buy from Supplier
imagej macro  (Radimetrics Inc)
86
Radimetrics Inc imagej macro
(a) The study population, and (b) the workflow for automated slice-specific calculation of the volume computed tomography dose index, water-equivalent diameter, and size-specific dose estimate using the <t>ImageJ</t> <t>macro.</t> CTDI vol , volume computed tomography dose index; D w , water-equivalent diameter; SSDE, size-specific dose estimate.
Imagej Macro, supplied by Radimetrics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/macros+in+imagej/imagej+macro/pmc13136667-98-23-26
Average 86 stars, based on 1 article reviews
imagej macro - by Bioz Stars, 2026-11
86/100 stars
  Buy from Supplier
imagej macro node  (KNIME GmbH)
90
KNIME GmbH imagej macro node
(a) The study population, and (b) the workflow for automated slice-specific calculation of the volume computed tomography dose index, water-equivalent diameter, and size-specific dose estimate using the <t>ImageJ</t> <t>macro.</t> CTDI vol , volume computed tomography dose index; D w , water-equivalent diameter; SSDE, size-specific dose estimate.
Imagej Macro Node, supplied by KNIME GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/macros+in+imagej/imagej+macro+node/pm28757289-112-14-28
Average 90 stars, based on 1 article reviews
imagej macro node - by Bioz Stars, 2026-11
90/100 stars
  Buy from Supplier
imagej macro in  (KNIME GmbH)
90
KNIME GmbH imagej macro in
(a) The study population, and (b) the workflow for automated slice-specific calculation of the volume computed tomography dose index, water-equivalent diameter, and size-specific dose estimate using the <t>ImageJ</t> <t>macro.</t> CTDI vol , volume computed tomography dose index; D w , water-equivalent diameter; SSDE, size-specific dose estimate.
Imagej Macro In, supplied by KNIME GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/macros+in+imagej/imagej+macro+in/pm35839781-344-1-4
Average 90 stars, based on 1 article reviews
imagej macro in - by Bioz Stars, 2026-11
90/100 stars
  Buy from Supplier

Image Search Results


Workflow of a semi-automated ImageJ macro used to quantify invasion into ex vivo brain slice cultures. This ImageJ macro is comprised of 9 semi-automated steps for analyzing the number of particles, area of each particle, and distance of each particle from the nearest edge of the spheroid. (i) A raw image is split into individual channels and (ii) the GFP only channel is converted to an 8-bit image (iii). The ImageJ macro then starts by creating a mask of the binary image (iv) and the software places an ellipse over the core of the spheroid, which can be adjusted if necessary to capture the edge of the spheroid (v). The ellipse is subtracted from the image (vi) and particles outside of the spheroid core are watershed (vii). Finally, a colour map (viii) is used by the software to calculate the distance of each particle from the nearest edge of the ellipse (ix) as well as the area of each particle.

Journal: Frontiers in Oncology

Article Title: Development and validation of an advanced ex vivo brain slice invasion assay to model glioblastoma cell invasion into the complex brain microenvironment

doi: 10.3389/fonc.2023.976945

Figure Lengend Snippet: Workflow of a semi-automated ImageJ macro used to quantify invasion into ex vivo brain slice cultures. This ImageJ macro is comprised of 9 semi-automated steps for analyzing the number of particles, area of each particle, and distance of each particle from the nearest edge of the spheroid. (i) A raw image is split into individual channels and (ii) the GFP only channel is converted to an 8-bit image (iii). The ImageJ macro then starts by creating a mask of the binary image (iv) and the software places an ellipse over the core of the spheroid, which can be adjusted if necessary to capture the edge of the spheroid (v). The ellipse is subtracted from the image (vi) and particles outside of the spheroid core are watershed (vii). Finally, a colour map (viii) is used by the software to calculate the distance of each particle from the nearest edge of the ellipse (ix) as well as the area of each particle.

Article Snippet: Our ImageJ macro (BraInZ) allows for the quantification of GBM brain slice invasion in the Z-direction.

Techniques: Ex Vivo, Slice Preparation, Software

KEY RESOURCES TABLE

Journal: Molecular cell

Article Title: Transcriptional Bursting and Co-bursting Regulation by Steroid Hormone Release Pattern and Transcription Factor Mobility

doi: 10.1016/j.molcel.2019.06.042

Figure Lengend Snippet: KEY RESOURCES TABLE

Article Snippet: As separate instance of KNIP ImageJ Macro node in our KNIME workflows invoked the necessary MultiStackReg plugin for applying the transformation to MMTV -PP7-GFP channel of the tracked nucleus.

Techniques: Recombinant, Electron Microscopy, SYBR Green Assay, Plasmid Preparation, Software

(a) The study population, and (b) the workflow for automated slice-specific calculation of the volume computed tomography dose index, water-equivalent diameter, and size-specific dose estimate using the ImageJ macro. CTDI vol , volume computed tomography dose index; D w , water-equivalent diameter; SSDE, size-specific dose estimate.

Journal: Diagnostic and Interventional Radiology

Article Title: Automated calculation of slice-specific volume computed tomography dose index, water-equivalent diameter, and size-specific dose estimation for computed tomography scans

doi: 10.4274/dir.2025.253555

Figure Lengend Snippet: (a) The study population, and (b) the workflow for automated slice-specific calculation of the volume computed tomography dose index, water-equivalent diameter, and size-specific dose estimate using the ImageJ macro. CTDI vol , volume computed tomography dose index; D w , water-equivalent diameter; SSDE, size-specific dose estimate.

Article Snippet: For the SSDE, the mean difference was –0.123 mGy (–1.911 to 1.665 mGy), with an ICC of 0.967, confirming near-perfect agreement between the ImageJ macro and Radimetrics for head scans on Scanner B.

Techniques: Computed Tomography

Bland–Altman plots comparing the dose parameters obtained from the ImageJ macro and the scanner console display (Scanner A) for (a) volume computed tomography dose index (CTDI vol ), (b) water-equivalent diameter (D w ), and (c) size-specific dose estimate (SSDE) in head computed tomography (CT) examinations and (d) CTDI vol , (e) D w , and (f) SSDE in chest/abdomen CT examinations. LOA, limits of agreement; ICC, intraclass correlation coefficient.

Journal: Diagnostic and Interventional Radiology

Article Title: Automated calculation of slice-specific volume computed tomography dose index, water-equivalent diameter, and size-specific dose estimation for computed tomography scans

doi: 10.4274/dir.2025.253555

Figure Lengend Snippet: Bland–Altman plots comparing the dose parameters obtained from the ImageJ macro and the scanner console display (Scanner A) for (a) volume computed tomography dose index (CTDI vol ), (b) water-equivalent diameter (D w ), and (c) size-specific dose estimate (SSDE) in head computed tomography (CT) examinations and (d) CTDI vol , (e) D w , and (f) SSDE in chest/abdomen CT examinations. LOA, limits of agreement; ICC, intraclass correlation coefficient.

Article Snippet: For the SSDE, the mean difference was –0.123 mGy (–1.911 to 1.665 mGy), with an ICC of 0.967, confirming near-perfect agreement between the ImageJ macro and Radimetrics for head scans on Scanner B.

Techniques: Computed Tomography

Bland–Altman plots comparing the dose parameters obtained from the ImageJ macro and Radimetrics (Scanner B) for (a) volume computed tomography dose index (CTDI vol ), (b) water-equivalent diameter (D w ), and (c) size-specific dose estimate (SSDE) in head computed tomography (CT) examinations and (d) CTDI vol , (e) D w , and (f) SSDE in chest/abdomen CT examinations. LOA, limits of agreement; ICC, intraclass correlation coefficient.

Journal: Diagnostic and Interventional Radiology

Article Title: Automated calculation of slice-specific volume computed tomography dose index, water-equivalent diameter, and size-specific dose estimation for computed tomography scans

doi: 10.4274/dir.2025.253555

Figure Lengend Snippet: Bland–Altman plots comparing the dose parameters obtained from the ImageJ macro and Radimetrics (Scanner B) for (a) volume computed tomography dose index (CTDI vol ), (b) water-equivalent diameter (D w ), and (c) size-specific dose estimate (SSDE) in head computed tomography (CT) examinations and (d) CTDI vol , (e) D w , and (f) SSDE in chest/abdomen CT examinations. LOA, limits of agreement; ICC, intraclass correlation coefficient.

Article Snippet: For the SSDE, the mean difference was –0.123 mGy (–1.911 to 1.665 mGy), with an ICC of 0.967, confirming near-perfect agreement between the ImageJ macro and Radimetrics for head scans on Scanner B.

Techniques: Computed Tomography

Box plot comparison of (a) the water-equivalent diameter and (b) size-specific dose estimate obtained from the ImageJ macro, computed tomography scanner console, and Radimetrics across anatomical regions and scanners. Boxes represent the interquartile range, center lines indicate the median, whiskers extend to the data range, and crosses (×) represent the mean values. CT, computed tomography; D w , water-equivalent diameter; SSDE, size-specific dose estimate.

Journal: Diagnostic and Interventional Radiology

Article Title: Automated calculation of slice-specific volume computed tomography dose index, water-equivalent diameter, and size-specific dose estimation for computed tomography scans

doi: 10.4274/dir.2025.253555

Figure Lengend Snippet: Box plot comparison of (a) the water-equivalent diameter and (b) size-specific dose estimate obtained from the ImageJ macro, computed tomography scanner console, and Radimetrics across anatomical regions and scanners. Boxes represent the interquartile range, center lines indicate the median, whiskers extend to the data range, and crosses (×) represent the mean values. CT, computed tomography; D w , water-equivalent diameter; SSDE, size-specific dose estimate.

Article Snippet: For the SSDE, the mean difference was –0.123 mGy (–1.911 to 1.665 mGy), with an ICC of 0.967, confirming near-perfect agreement between the ImageJ macro and Radimetrics for head scans on Scanner B.

Techniques: Comparison, Computed Tomography