Journal: Nucleic Acids Research

Article Title: Novel RNA-binding activity of MYF5 enhances Ccnd1 / Cyclin D1 mRNA translation during myogenesis

doi: 10.1093/nar/gkw023

Figure Lengend Snippet: MYF5 target transcripts include mRNAs that encode proteins involved in myoblast proliferation and differentiation. ( A ) RIP assay using cytoplasmic lysates prepared from C2C12 cells using either anti-MYF5 antibody or IgG under conditions that preserved mRNA-RBP (mRNP) complexes. ( B ) Western blot analysis of MYF5 recovered in IP samples. ( C ) Following MYF5 RIP, MYF5-bound mRNAs were identified by microarray (RIP-chip) analysis in growing (GM) C2C12 cells. Data represent the Z -ratio of mRNAs in MYF5 RIP relative to IgG RIP. ( D ) RIP followed by RT-qPCR analysis to validate the association of MYF5 with mRNAs encoding myogenic proteins in proliferating C2C12 myoblasts; the levels of mRNAs in MYF5 IP were normalized to the levels of Gapdh mRNA and plotted as fold enrichment relative to the levels seen in control IgG IP samples. Discontinuous gray line: twofold enrichment in mRNAs bound to MYF5. ( E ) RIP analysis of Flag-MYF5 interaction with Ccnd1 mRNA. Forty-eight hours after C2C12 transfection with Flag-MYF5, RIP analysis was carried out using IgG or anti-Flag antibodies. Ccnd1 mRNA was detected by RT-qPCR analysis and its levels in Flag IP were compared with those in control IgG IP samples; Actn mRNA (encoding the housekeeping protein β-Actin) was measured to normalize sample input. Data in (D,E) represent the means and S.E.M. from three or more independent experiments. ( F ) Ingenuity pathway analysis (IPA) of mRNAs enriched in MYF5 IP relative to IgG in C2C12 growing myoblasts. *, P < 0.05 and **, P < 0.01 (Student's t -test).

Article Snippet: CCND1 siRNA (SR408533, Origene) was transfected 48 h before measuring cell number.

Techniques: Western Blot, Microarray, RNA Immunoprecipitation - Chromatin Immunoprecipitation, Quantitative RT-PCR, Control, Transfection

Journal: Nucleic Acids Research

Article Title: Novel RNA-binding activity of MYF5 enhances Ccnd1 / Cyclin D1 mRNA translation during myogenesis

doi: 10.1093/nar/gkw023

Figure Lengend Snippet: MYF5 binds to specific sequences on the Ccnd1 mRNA. (A) Top , schematic showing biotinylated RNA fragments spanning the 5′UTR, coding region (CR), and 3′UTR of Ccnd1 mRNA used for pulldown. Bottom , biotinylated RNA fragments were incubated with cytoplasmic lysates from C2C12 cells (GM); after pulldown using streptavidin beads, the levels of MYF5 bound to the biotinylated RNA segments were detected by western blot analysis. (B) Recombinant purified His-MYF5 was incubated with biotinylated Ccnd1 RNA fragments followed by pulldown and detection of MYF5 by western blot analysis using anti-MYF5 antibody. (C) Schematic of biotinylated RNA fragments spanning the Ccnd1 3′UTR-C transcript ( top ), were tested for binding to His-MYF5 after pull-down using streptavidin beads; His-MYF5 interaction with RNA segments of fragment C ( middle ) and smaller RNAs after closer subdivision of fragments 9 through 11 ( bottom ) were assessed by western blot analysis using anti-MYF5 antibody. (D) GST or GST-MYF5 were incubated with radiolabeled Ccnd1 3′UTR-C10–1, then either resolved on native acrylamide gels ( left ) by RNA electrophoretic mobility shift assay (EMSA), or crosslinked by UV irradiation and resolved by SDS-PAGE ( right ). (E) The domain of MYF5 that interacts with the Ccnd1 3′-C fragment was mapped by creating GST-tagged truncations of MYF5 ( left ) and testing their interaction by biotin pulldown and western blot analysis using anti-GST antibody ( right ).

Article Snippet: CCND1 siRNA (SR408533, Origene) was transfected 48 h before measuring cell number.

Techniques: Incubation, Western Blot, Recombinant, Purification, Binding Assay, Electrophoretic Mobility Shift Assay, Irradiation, SDS Page

Journal: Nucleic Acids Research

Article Title: Novel RNA-binding activity of MYF5 enhances Ccnd1 / Cyclin D1 mRNA translation during myogenesis

doi: 10.1093/nar/gkw023

Figure Lengend Snippet: MYF5 regulates CCND1 expression in C2C12 myoblasts. (A) Western blot analysis of MYF5 and CCND1 expression during C2C12 differentiation; heat shock protein 90 (HSP90) was included as loading control. (B,C) Forty-eight hours after transfecting C2C12 cells with MYF5 siRNA or Ctrl siRNA, the levels of MYF5, CCND1 and loading control GAPDH were analyzed by western blot analysis (B) and the levels of Ccnd1 pre-mRNA and mRNA by RT-qPCR analysis (C). (D–F) Forty-eight hours after transfection of proliferating C2C12 myoblasts with Ctrl or CCND1 siRNAs, the levels of CCND1 and HSP90 were assessed by western blot analysis (D) and cell numbers were measured using a TC10 automated cell counter (BioRad) and represented as fold change in cell number after CCND1 silencing relative to those in the Ctrl siRNA group (E). At day 6 in differentiation medium (DM6) C2C12 differentiation was monitored by measuring creatine kinase activity (F). (G) Forty-eight hours after MYF5 was overexpressed using pFlag-MYF5 pcDNA3, the levels of MYF5, CCND1 and loading control HSP90 were studied by western blot analysis. Data in (B-F) represent the means and S.E.M. from three or four independent experiments. *, P < 0.05 and **, P < 0.01 (Student's t -test).

Article Snippet: CCND1 siRNA (SR408533, Origene) was transfected 48 h before measuring cell number.

Techniques: Expressing, Western Blot, Control, Quantitative RT-PCR, Transfection, Activity Assay

Journal: Nucleic Acids Research

Article Title: Novel RNA-binding activity of MYF5 enhances Ccnd1 / Cyclin D1 mRNA translation during myogenesis

doi: 10.1093/nar/gkw023

Figure Lengend Snippet: MYF5 promotes translation of Ccnd1 mRNA. (A,B) Forty-eight hours after Ctrl or MYF5 siRNA transfection of C2C12 cells, cytoplasmic extracts were fractionated through sucrose gradients to obtain cytoplasmic components of progressively larger weight: ribosomal subunits (40S, 60S), monosomes (80S) and low-molecular-weight (LMW) and high-molecular-weight (HMW) polysomes (A). The relative distribution of Gapdh mRNA, encoding a housekeeping protein, and Ccnd1 mRNA were measured by RT-qPCR analysis of RNA in each of the gradient fractions and represented as percentage of total RNA in the gradient (B). (C) Schematic of the dual luciferase reporter plasmids derived from the parent vector psiCHECK2 (psi), which expresses renilla luciferase (RL) and the internal control firefly luciferase (FL), and psiCHECK2-derived plasmids bearing the Ccnd1 fragments downstream of the RL coding region. (D) Top , Influence of MYF5 silencing on the expression of the reporter constructs. Twenty-four h after transfection of C2C12 cells with either MYF5 siRNA or Ctrl siRNA, each reporter plasmid was transfected, and 16 h later the ratio of RL activity to FL activity was measured. The decrease in relative RL/FL ratio of MYF5 siRNA-transfected cells relative to the RL/FL ratio of Ctrl siRNA-transfected cells is indicated. Bottom , RT-qPCR analysis of RL mRNA levels normalized to FL mRNA levels in each transfection group. Data represent the means and S.E.M. from 3 independent experiments. N.S., not significant; *, P < 0.05; **, P < 0.01 (Student's t -test).

Article Snippet: CCND1 siRNA (SR408533, Origene) was transfected 48 h before measuring cell number.

Techniques: Transfection, Molecular Weight, High Molecular Weight, Quantitative RT-PCR, Luciferase, Derivative Assay, Plasmid Preparation, Control, Expressing, Construct, Activity Assay

Journal: Nucleic Acids Research

Article Title: Novel RNA-binding activity of MYF5 enhances Ccnd1 / Cyclin D1 mRNA translation during myogenesis

doi: 10.1093/nar/gkw023

Figure Lengend Snippet: Influence of MYF5 on myogenesis via regulation of CCND1 expression. (A,B) C2C12 cells were transfected with MYF5 siRNA or Ctrl siRNA, along with a control vector [pcDNA3-Flag (pV)] or a plasmid vector that expressed Myc-tagged CCND1. Forty-eight hours later, the levels of CCND1 and MYF5 were analyzed by western blot analysis (A) and the degree of differentiation was analyzed by measuring creatine kinase activity at day 6 into differentiation (B). Data presented are the means and S.E.M. from four independent experiments; significance (P) is indicated. (C) Proposed model whereby MYF5 modulates myogenesis by acting upon CCND1 expression on two levels: first, MYF5 activates Ccnd1 transcription moderately, and second, MYF5 binds the Ccnd1 mRNA at the CR and 3′UTR, promoting Ccnd1 mRNA translation. The net effect is a CCND1-mediated increase in myoblast proliferation necessary at the initiation of myogenesis. N.S., not significant; *, P < 0.05; **, P < 0.01 (Student's t -test).

Article Snippet: CCND1 siRNA (SR408533, Origene) was transfected 48 h before measuring cell number.

Techniques: Expressing, Transfection, Control, Plasmid Preparation, Western Blot, Activity Assay

Journal: Bioengineered

Article Title: Bone mesenchymal stem cells-derived miR-223-3p-containing exosomes ameliorate lipopolysaccharide-induced acute uterine injury via interacting with endothelial progenitor cells

doi: 10.1080/21655979.2021.2001185

Figure Lengend Snippet: LPS suppressed EPCs cell viability via inducing cell pyroptosis. (a, b) NLRP3 was silenced in EPCs cells. (c) MTT assay was used to examine cell viability. (d) The expression status of Cyclin D1 and CDK2 were determined by Western blot analysis. Individual experiment repeated 3 times, and * P < 0.05

Article Snippet: Next, the PVDF membranes were incubated with the primary antibodies against NLRP3 (1:1500, Catalog MAB7578, R&D system, USA), ASC (1:1000, Catalog AF3805, R&D system, USA), N-Gasdermin D (1:1000, Catalog ab209845, Abcam, UK), GAPDH (1:2000, Catalog 2275-PC-100, R&D system, USA), cleaved Caspase-3 (1:1500, Catalog AF835, R&D system, USA), Bax (1:2000, AF820, R&D system, USA), Cyclin D1 (1:1500, Catalog MAB4314, R&D system, USA) and CDK2 (1:2000, Catalog AF4654, R&D system, USA) at 4 °C overnight.

Techniques: MTT Assay, Expressing, Western Blot

Journal: International journal of cancer

Article Title: An alternative splicing isoform of eukaryotic initiation factor 4H promotes tumorigenesis in vivo and is a potential therapeutic target for human cancer.

doi: 10.1002/ijc.25419

Figure Lengend Snippet: Figure 6. Cyclin D1 upregulation is involved in the transforming activity of eIF4H isoform 1. (a) Expressions of cyclin D1 and c-Myc in three

Article Snippet: Cyclin D1 expression plasmid (CCND1 Human cDNA Clone) was purchased from Origene (Rockville, MD).

Techniques: Activity Assay