endonucleases Search Results


95
New England Biolabs neb endo iv
Neb Endo Iv, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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95
ArcticZymes hl dsdnase
Hl Dsdnase, supplied by ArcticZymes, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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97
New England Biolabs t7 endonuclease
T7 Endonuclease, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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97
New England Biolabs endonuclease v
a Schematic diagram of the color-switching construct of the rd12 reporter-cell line. An intervening sequence from the Rpe65 - rd12 genomic sequence containing the mutation (c.130 C  >  T; p.R44X) was inserted into a gene expressing both mCherry and eGFP. Expression of eGFP in the reporter cells is prevented by a STOP codon, which can be restored via proper action of ABE. b Representative fluorescence-microscopic images of rd12 -reporter cells 48 h after adding the RNP-CBB complex. Scale bar, 400 μm. c , d Quantitative assessment of ABE-RNP delivery into rd12 -reporter cells, mediated by lipidoid complexes of ABE8e with CBB compounds ( c ) by flow cytometry; or CBBZ compounds ( d ) by fluorescence-microscopic imaging only. [ABE8e]/[CBB(Z)] = 1:8. A, ABE8e-RNP only. NE, no enzyme. Quantification of ABE8e RNP delivery mediated by Lipofectamine 3000 (LF) is included as a positive control. The ratio (eGFP/mCherry) reflects the relative editing efficiency. The CBB compounds were considered positive hits if the ratio of green-to-red (eGFP/mCherry) was more than twice that of A (the dashed line). Data are presented as mean ± SD, n = 4 replicates ( c ) and 3 replicates ( d ). e Schematic diagram of the ABE-activity assay. EndoV = endonuclease V. Blue, SpCas9 PAM; red, target base; orange, bystander base; arrowhead, nick site; FAM, fluorescein. f Representative urea-PAGE-gel image of products of ABE deamination cleaved by EndoV. The gel was imaged with a fluorescein filter. N, no enzyme; P, positive control: 60 bp DNA with inosine in the middle; A, ABE-RNP in TAS; D, ABE-RNP in TAS with 10% DMSO. Numbers indicate molar excess of the CBB compound versus ABE. g Fluorescence quantification of substrate and products of deamination and EndoV cleavage. Two independent samples per data point were assayed in parallel. Source data are provided as a Source Data file.
Endonuclease V, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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95
New England Biolabs endonuclease viii
a Schematic diagram of the color-switching construct of the rd12 reporter-cell line. An intervening sequence from the Rpe65 - rd12 genomic sequence containing the mutation (c.130 C  >  T; p.R44X) was inserted into a gene expressing both mCherry and eGFP. Expression of eGFP in the reporter cells is prevented by a STOP codon, which can be restored via proper action of ABE. b Representative fluorescence-microscopic images of rd12 -reporter cells 48 h after adding the RNP-CBB complex. Scale bar, 400 μm. c , d Quantitative assessment of ABE-RNP delivery into rd12 -reporter cells, mediated by lipidoid complexes of ABE8e with CBB compounds ( c ) by flow cytometry; or CBBZ compounds ( d ) by fluorescence-microscopic imaging only. [ABE8e]/[CBB(Z)] = 1:8. A, ABE8e-RNP only. NE, no enzyme. Quantification of ABE8e RNP delivery mediated by Lipofectamine 3000 (LF) is included as a positive control. The ratio (eGFP/mCherry) reflects the relative editing efficiency. The CBB compounds were considered positive hits if the ratio of green-to-red (eGFP/mCherry) was more than twice that of A (the dashed line). Data are presented as mean ± SD, n = 4 replicates ( c ) and 3 replicates ( d ). e Schematic diagram of the ABE-activity assay. EndoV = endonuclease V. Blue, SpCas9 PAM; red, target base; orange, bystander base; arrowhead, nick site; FAM, fluorescein. f Representative urea-PAGE-gel image of products of ABE deamination cleaved by EndoV. The gel was imaged with a fluorescein filter. N, no enzyme; P, positive control: 60 bp DNA with inosine in the middle; A, ABE-RNP in TAS; D, ABE-RNP in TAS with 10% DMSO. Numbers indicate molar excess of the CBB compound versus ABE. g Fluorescence quantification of substrate and products of deamination and EndoV cleavage. Two independent samples per data point were assayed in parallel. Source data are provided as a Source Data file.
Endonuclease Viii, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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94
New England Biolabs mismatch sensitive endonuclease assay
a Schematic diagram of the color-switching construct of the rd12 reporter-cell line. An intervening sequence from the Rpe65 - rd12 genomic sequence containing the mutation (c.130 C  >  T; p.R44X) was inserted into a gene expressing both mCherry and eGFP. Expression of eGFP in the reporter cells is prevented by a STOP codon, which can be restored via proper action of ABE. b Representative fluorescence-microscopic images of rd12 -reporter cells 48 h after adding the RNP-CBB complex. Scale bar, 400 μm. c , d Quantitative assessment of ABE-RNP delivery into rd12 -reporter cells, mediated by lipidoid complexes of ABE8e with CBB compounds ( c ) by flow cytometry; or CBBZ compounds ( d ) by fluorescence-microscopic imaging only. [ABE8e]/[CBB(Z)] = 1:8. A, ABE8e-RNP only. NE, no enzyme. Quantification of ABE8e RNP delivery mediated by Lipofectamine 3000 (LF) is included as a positive control. The ratio (eGFP/mCherry) reflects the relative editing efficiency. The CBB compounds were considered positive hits if the ratio of green-to-red (eGFP/mCherry) was more than twice that of A (the dashed line). Data are presented as mean ± SD, n = 4 replicates ( c ) and 3 replicates ( d ). e Schematic diagram of the ABE-activity assay. EndoV = endonuclease V. Blue, SpCas9 PAM; red, target base; orange, bystander base; arrowhead, nick site; FAM, fluorescein. f Representative urea-PAGE-gel image of products of ABE deamination cleaved by EndoV. The gel was imaged with a fluorescein filter. N, no enzyme; P, positive control: 60 bp DNA with inosine in the middle; A, ABE-RNP in TAS; D, ABE-RNP in TAS with 10% DMSO. Numbers indicate molar excess of the CBB compound versus ABE. g Fluorescence quantification of substrate and products of deamination and EndoV cleavage. Two independent samples per data point were assayed in parallel. Source data are provided as a Source Data file.
Mismatch Sensitive Endonuclease Assay, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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93
New England Biolabs tth endoiv
a Schematic diagram of the color-switching construct of the rd12 reporter-cell line. An intervening sequence from the Rpe65 - rd12 genomic sequence containing the mutation (c.130 C  >  T; p.R44X) was inserted into a gene expressing both mCherry and eGFP. Expression of eGFP in the reporter cells is prevented by a STOP codon, which can be restored via proper action of ABE. b Representative fluorescence-microscopic images of rd12 -reporter cells 48 h after adding the RNP-CBB complex. Scale bar, 400 μm. c , d Quantitative assessment of ABE-RNP delivery into rd12 -reporter cells, mediated by lipidoid complexes of ABE8e with CBB compounds ( c ) by flow cytometry; or CBBZ compounds ( d ) by fluorescence-microscopic imaging only. [ABE8e]/[CBB(Z)] = 1:8. A, ABE8e-RNP only. NE, no enzyme. Quantification of ABE8e RNP delivery mediated by Lipofectamine 3000 (LF) is included as a positive control. The ratio (eGFP/mCherry) reflects the relative editing efficiency. The CBB compounds were considered positive hits if the ratio of green-to-red (eGFP/mCherry) was more than twice that of A (the dashed line). Data are presented as mean ± SD, n = 4 replicates ( c ) and 3 replicates ( d ). e Schematic diagram of the ABE-activity assay. EndoV = endonuclease V. Blue, SpCas9 PAM; red, target base; orange, bystander base; arrowhead, nick site; FAM, fluorescein. f Representative urea-PAGE-gel image of products of ABE deamination cleaved by EndoV. The gel was imaged with a fluorescein filter. N, no enzyme; P, positive control: 60 bp DNA with inosine in the middle; A, ABE-RNP in TAS; D, ABE-RNP in TAS with 10% DMSO. Numbers indicate molar excess of the CBB compound versus ABE. g Fluorescence quantification of substrate and products of deamination and EndoV cleavage. Two independent samples per data point were assayed in parallel. Source data are provided as a Source Data file.
Tth Endoiv, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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99
New England Biolabs single end libraries
a Schematic diagram of the color-switching construct of the rd12 reporter-cell line. An intervening sequence from the Rpe65 - rd12 genomic sequence containing the mutation (c.130 C  >  T; p.R44X) was inserted into a gene expressing both mCherry and eGFP. Expression of eGFP in the reporter cells is prevented by a STOP codon, which can be restored via proper action of ABE. b Representative fluorescence-microscopic images of rd12 -reporter cells 48 h after adding the RNP-CBB complex. Scale bar, 400 μm. c , d Quantitative assessment of ABE-RNP delivery into rd12 -reporter cells, mediated by lipidoid complexes of ABE8e with CBB compounds ( c ) by flow cytometry; or CBBZ compounds ( d ) by fluorescence-microscopic imaging only. [ABE8e]/[CBB(Z)] = 1:8. A, ABE8e-RNP only. NE, no enzyme. Quantification of ABE8e RNP delivery mediated by Lipofectamine 3000 (LF) is included as a positive control. The ratio (eGFP/mCherry) reflects the relative editing efficiency. The CBB compounds were considered positive hits if the ratio of green-to-red (eGFP/mCherry) was more than twice that of A (the dashed line). Data are presented as mean ± SD, n = 4 replicates ( c ) and 3 replicates ( d ). e Schematic diagram of the ABE-activity assay. EndoV = endonuclease V. Blue, SpCas9 PAM; red, target base; orange, bystander base; arrowhead, nick site; FAM, fluorescein. f Representative urea-PAGE-gel image of products of ABE deamination cleaved by EndoV. The gel was imaged with a fluorescein filter. N, no enzyme; P, positive control: 60 bp DNA with inosine in the middle; A, ABE-RNP in TAS; D, ABE-RNP in TAS with 10% DMSO. Numbers indicate molar excess of the CBB compound versus ABE. g Fluorescence quantification of substrate and products of deamination and EndoV cleavage. Two independent samples per data point were assayed in parallel. Source data are provided as a Source Data file.
Single End Libraries, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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95
New England Biolabs endoviii cat no m0299s
a Schematic diagram of the color-switching construct of the rd12 reporter-cell line. An intervening sequence from the Rpe65 - rd12 genomic sequence containing the mutation (c.130 C  >  T; p.R44X) was inserted into a gene expressing both mCherry and eGFP. Expression of eGFP in the reporter cells is prevented by a STOP codon, which can be restored via proper action of ABE. b Representative fluorescence-microscopic images of rd12 -reporter cells 48 h after adding the RNP-CBB complex. Scale bar, 400 μm. c , d Quantitative assessment of ABE-RNP delivery into rd12 -reporter cells, mediated by lipidoid complexes of ABE8e with CBB compounds ( c ) by flow cytometry; or CBBZ compounds ( d ) by fluorescence-microscopic imaging only. [ABE8e]/[CBB(Z)] = 1:8. A, ABE8e-RNP only. NE, no enzyme. Quantification of ABE8e RNP delivery mediated by Lipofectamine 3000 (LF) is included as a positive control. The ratio (eGFP/mCherry) reflects the relative editing efficiency. The CBB compounds were considered positive hits if the ratio of green-to-red (eGFP/mCherry) was more than twice that of A (the dashed line). Data are presented as mean ± SD, n = 4 replicates ( c ) and 3 replicates ( d ). e Schematic diagram of the ABE-activity assay. EndoV = endonuclease V. Blue, SpCas9 PAM; red, target base; orange, bystander base; arrowhead, nick site; FAM, fluorescein. f Representative urea-PAGE-gel image of products of ABE deamination cleaved by EndoV. The gel was imaged with a fluorescein filter. N, no enzyme; P, positive control: 60 bp DNA with inosine in the middle; A, ABE-RNP in TAS; D, ABE-RNP in TAS with 10% DMSO. Numbers indicate molar excess of the CBB compound versus ABE. g Fluorescence quantification of substrate and products of deamination and EndoV cleavage. Two independent samples per data point were assayed in parallel. Source data are provided as a Source Data file.
Endoviii Cat No M0299s, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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97
New England Biolabs t7ei
a Schematic diagram of the color-switching construct of the rd12 reporter-cell line. An intervening sequence from the Rpe65 - rd12 genomic sequence containing the mutation (c.130 C  >  T; p.R44X) was inserted into a gene expressing both mCherry and eGFP. Expression of eGFP in the reporter cells is prevented by a STOP codon, which can be restored via proper action of ABE. b Representative fluorescence-microscopic images of rd12 -reporter cells 48 h after adding the RNP-CBB complex. Scale bar, 400 μm. c , d Quantitative assessment of ABE-RNP delivery into rd12 -reporter cells, mediated by lipidoid complexes of ABE8e with CBB compounds ( c ) by flow cytometry; or CBBZ compounds ( d ) by fluorescence-microscopic imaging only. [ABE8e]/[CBB(Z)] = 1:8. A, ABE8e-RNP only. NE, no enzyme. Quantification of ABE8e RNP delivery mediated by Lipofectamine 3000 (LF) is included as a positive control. The ratio (eGFP/mCherry) reflects the relative editing efficiency. The CBB compounds were considered positive hits if the ratio of green-to-red (eGFP/mCherry) was more than twice that of A (the dashed line). Data are presented as mean ± SD, n = 4 replicates ( c ) and 3 replicates ( d ). e Schematic diagram of the ABE-activity assay. EndoV = endonuclease V. Blue, SpCas9 PAM; red, target base; orange, bystander base; arrowhead, nick site; FAM, fluorescein. f Representative urea-PAGE-gel image of products of ABE deamination cleaved by EndoV. The gel was imaged with a fluorescein filter. N, no enzyme; P, positive control: 60 bp DNA with inosine in the middle; A, ABE-RNP in TAS; D, ABE-RNP in TAS with 10% DMSO. Numbers indicate molar excess of the CBB compound versus ABE. g Fluorescence quantification of substrate and products of deamination and EndoV cleavage. Two independent samples per data point were assayed in parallel. Source data are provided as a Source Data file.
T7ei, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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93
Proteintech anti fen1
a Schematic diagram of the color-switching construct of the rd12 reporter-cell line. An intervening sequence from the Rpe65 - rd12 genomic sequence containing the mutation (c.130 C  >  T; p.R44X) was inserted into a gene expressing both mCherry and eGFP. Expression of eGFP in the reporter cells is prevented by a STOP codon, which can be restored via proper action of ABE. b Representative fluorescence-microscopic images of rd12 -reporter cells 48 h after adding the RNP-CBB complex. Scale bar, 400 μm. c , d Quantitative assessment of ABE-RNP delivery into rd12 -reporter cells, mediated by lipidoid complexes of ABE8e with CBB compounds ( c ) by flow cytometry; or CBBZ compounds ( d ) by fluorescence-microscopic imaging only. [ABE8e]/[CBB(Z)] = 1:8. A, ABE8e-RNP only. NE, no enzyme. Quantification of ABE8e RNP delivery mediated by Lipofectamine 3000 (LF) is included as a positive control. The ratio (eGFP/mCherry) reflects the relative editing efficiency. The CBB compounds were considered positive hits if the ratio of green-to-red (eGFP/mCherry) was more than twice that of A (the dashed line). Data are presented as mean ± SD, n = 4 replicates ( c ) and 3 replicates ( d ). e Schematic diagram of the ABE-activity assay. EndoV = endonuclease V. Blue, SpCas9 PAM; red, target base; orange, bystander base; arrowhead, nick site; FAM, fluorescein. f Representative urea-PAGE-gel image of products of ABE deamination cleaved by EndoV. The gel was imaged with a fluorescein filter. N, no enzyme; P, positive control: 60 bp DNA with inosine in the middle; A, ABE-RNP in TAS; D, ABE-RNP in TAS with 10% DMSO. Numbers indicate molar excess of the CBB compound versus ABE. g Fluorescence quantification of substrate and products of deamination and EndoV cleavage. Two independent samples per data point were assayed in parallel. Source data are provided as a Source Data file.
Anti Fen1, supplied by Proteintech, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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94
Genecopoeia t7 endonuclease assay
a Schematic diagram of the color-switching construct of the rd12 reporter-cell line. An intervening sequence from the Rpe65 - rd12 genomic sequence containing the mutation (c.130 C  >  T; p.R44X) was inserted into a gene expressing both mCherry and eGFP. Expression of eGFP in the reporter cells is prevented by a STOP codon, which can be restored via proper action of ABE. b Representative fluorescence-microscopic images of rd12 -reporter cells 48 h after adding the RNP-CBB complex. Scale bar, 400 μm. c , d Quantitative assessment of ABE-RNP delivery into rd12 -reporter cells, mediated by lipidoid complexes of ABE8e with CBB compounds ( c ) by flow cytometry; or CBBZ compounds ( d ) by fluorescence-microscopic imaging only. [ABE8e]/[CBB(Z)] = 1:8. A, ABE8e-RNP only. NE, no enzyme. Quantification of ABE8e RNP delivery mediated by Lipofectamine 3000 (LF) is included as a positive control. The ratio (eGFP/mCherry) reflects the relative editing efficiency. The CBB compounds were considered positive hits if the ratio of green-to-red (eGFP/mCherry) was more than twice that of A (the dashed line). Data are presented as mean ± SD, n = 4 replicates ( c ) and 3 replicates ( d ). e Schematic diagram of the ABE-activity assay. EndoV = endonuclease V. Blue, SpCas9 PAM; red, target base; orange, bystander base; arrowhead, nick site; FAM, fluorescein. f Representative urea-PAGE-gel image of products of ABE deamination cleaved by EndoV. The gel was imaged with a fluorescein filter. N, no enzyme; P, positive control: 60 bp DNA with inosine in the middle; A, ABE-RNP in TAS; D, ABE-RNP in TAS with 10% DMSO. Numbers indicate molar excess of the CBB compound versus ABE. g Fluorescence quantification of substrate and products of deamination and EndoV cleavage. Two independent samples per data point were assayed in parallel. Source data are provided as a Source Data file.
T7 Endonuclease Assay, supplied by Genecopoeia, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


a Schematic diagram of the color-switching construct of the rd12 reporter-cell line. An intervening sequence from the Rpe65 - rd12 genomic sequence containing the mutation (c.130 C  >  T; p.R44X) was inserted into a gene expressing both mCherry and eGFP. Expression of eGFP in the reporter cells is prevented by a STOP codon, which can be restored via proper action of ABE. b Representative fluorescence-microscopic images of rd12 -reporter cells 48 h after adding the RNP-CBB complex. Scale bar, 400 μm. c , d Quantitative assessment of ABE-RNP delivery into rd12 -reporter cells, mediated by lipidoid complexes of ABE8e with CBB compounds ( c ) by flow cytometry; or CBBZ compounds ( d ) by fluorescence-microscopic imaging only. [ABE8e]/[CBB(Z)] = 1:8. A, ABE8e-RNP only. NE, no enzyme. Quantification of ABE8e RNP delivery mediated by Lipofectamine 3000 (LF) is included as a positive control. The ratio (eGFP/mCherry) reflects the relative editing efficiency. The CBB compounds were considered positive hits if the ratio of green-to-red (eGFP/mCherry) was more than twice that of A (the dashed line). Data are presented as mean ± SD, n = 4 replicates ( c ) and 3 replicates ( d ). e Schematic diagram of the ABE-activity assay. EndoV = endonuclease V. Blue, SpCas9 PAM; red, target base; orange, bystander base; arrowhead, nick site; FAM, fluorescein. f Representative urea-PAGE-gel image of products of ABE deamination cleaved by EndoV. The gel was imaged with a fluorescein filter. N, no enzyme; P, positive control: 60 bp DNA with inosine in the middle; A, ABE-RNP in TAS; D, ABE-RNP in TAS with 10% DMSO. Numbers indicate molar excess of the CBB compound versus ABE. g Fluorescence quantification of substrate and products of deamination and EndoV cleavage. Two independent samples per data point were assayed in parallel. Source data are provided as a Source Data file.

Journal: Nature Communications

Article Title: A combinatorial synthetic strategy for developing genome-editing protein-delivery agents targeting mouse retina

doi: 10.1038/s41467-026-69077-w

Figure Lengend Snippet: a Schematic diagram of the color-switching construct of the rd12 reporter-cell line. An intervening sequence from the Rpe65 - rd12 genomic sequence containing the mutation (c.130 C  >  T; p.R44X) was inserted into a gene expressing both mCherry and eGFP. Expression of eGFP in the reporter cells is prevented by a STOP codon, which can be restored via proper action of ABE. b Representative fluorescence-microscopic images of rd12 -reporter cells 48 h after adding the RNP-CBB complex. Scale bar, 400 μm. c , d Quantitative assessment of ABE-RNP delivery into rd12 -reporter cells, mediated by lipidoid complexes of ABE8e with CBB compounds ( c ) by flow cytometry; or CBBZ compounds ( d ) by fluorescence-microscopic imaging only. [ABE8e]/[CBB(Z)] = 1:8. A, ABE8e-RNP only. NE, no enzyme. Quantification of ABE8e RNP delivery mediated by Lipofectamine 3000 (LF) is included as a positive control. The ratio (eGFP/mCherry) reflects the relative editing efficiency. The CBB compounds were considered positive hits if the ratio of green-to-red (eGFP/mCherry) was more than twice that of A (the dashed line). Data are presented as mean ± SD, n = 4 replicates ( c ) and 3 replicates ( d ). e Schematic diagram of the ABE-activity assay. EndoV = endonuclease V. Blue, SpCas9 PAM; red, target base; orange, bystander base; arrowhead, nick site; FAM, fluorescein. f Representative urea-PAGE-gel image of products of ABE deamination cleaved by EndoV. The gel was imaged with a fluorescein filter. N, no enzyme; P, positive control: 60 bp DNA with inosine in the middle; A, ABE-RNP in TAS; D, ABE-RNP in TAS with 10% DMSO. Numbers indicate molar excess of the CBB compound versus ABE. g Fluorescence quantification of substrate and products of deamination and EndoV cleavage. Two independent samples per data point were assayed in parallel. Source data are provided as a Source Data file.

Article Snippet: Purified DNA was nicked with 5 units of Endonuclease V (EndoV, NEB) for 2-3 h at 37 °C, after which the reaction was quenched by addition of TriTrack DNA-loading dye (1 × final) (Thermo Fisher, R1161) and incubation at 95 °C for 2 min.

Techniques: Construct, Sequencing, Mutagenesis, Expressing, Fluorescence, Flow Cytometry, Imaging, Positive Control, Activity Assay