domain database of interproscan Search Results


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Comparative transcriptome of CP and YP cultivars. (A) Venn diagram depicts number of differential expressed (DE) genes commonly found in both CP and YP cultivars. A total of 883 and 448 genes were DE during heat stress in CP and YP, respectively. A set of 329 genes showed similar expression pattern in both CP and YP cultivars during heat stress. (B) Classification of DE genes based on their Pfam domain annotated by <t>InterProScan.</t> All the DE genes were grouped according to the pfam domain and plotted the top six gene families showing major response against heat stress in P. ginseng .
Annotation By Interproscan, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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InterPro Inc interproscans
Comparative transcriptome of CP and YP cultivars. (A) Venn diagram depicts number of differential expressed (DE) genes commonly found in both CP and YP cultivars. A total of 883 and 448 genes were DE during heat stress in CP and YP, respectively. A set of 329 genes showed similar expression pattern in both CP and YP cultivars during heat stress. (B) Classification of DE genes based on their Pfam domain annotated by <t>InterProScan.</t> All the DE genes were grouped according to the pfam domain and plotted the top six gene families showing major response against heat stress in P. ginseng .
Interproscans, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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InterPro Inc interproscan server
Comparative transcriptome of CP and YP cultivars. (A) Venn diagram depicts number of differential expressed (DE) genes commonly found in both CP and YP cultivars. A total of 883 and 448 genes were DE during heat stress in CP and YP, respectively. A set of 329 genes showed similar expression pattern in both CP and YP cultivars during heat stress. (B) Classification of DE genes based on their Pfam domain annotated by <t>InterProScan.</t> All the DE genes were grouped according to the pfam domain and plotted the top six gene families showing major response against heat stress in P. ginseng .
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InterPro Inc interproscan 5.67-99.0
Comparative transcriptome of CP and YP cultivars. (A) Venn diagram depicts number of differential expressed (DE) genes commonly found in both CP and YP cultivars. A total of 883 and 448 genes were DE during heat stress in CP and YP, respectively. A set of 329 genes showed similar expression pattern in both CP and YP cultivars during heat stress. (B) Classification of DE genes based on their Pfam domain annotated by <t>InterProScan.</t> All the DE genes were grouped according to the pfam domain and plotted the top six gene families showing major response against heat stress in P. ginseng .
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Illumina Inc domain prediction from interproscan on the g7085vir protein
Comparative transcriptome of CP and YP cultivars. (A) Venn diagram depicts number of differential expressed (DE) genes commonly found in both CP and YP cultivars. A total of 883 and 448 genes were DE during heat stress in CP and YP, respectively. A set of 329 genes showed similar expression pattern in both CP and YP cultivars during heat stress. (B) Classification of DE genes based on their Pfam domain annotated by <t>InterProScan.</t> All the DE genes were grouped according to the pfam domain and plotted the top six gene families showing major response against heat stress in P. ginseng .
Domain Prediction From Interproscan On The G7085vir Protein, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Biomatters Ltd interproscan
Comparative transcriptome of CP and YP cultivars. (A) Venn diagram depicts number of differential expressed (DE) genes commonly found in both CP and YP cultivars. A total of 883 and 448 genes were DE during heat stress in CP and YP, respectively. A set of 329 genes showed similar expression pattern in both CP and YP cultivars during heat stress. (B) Classification of DE genes based on their Pfam domain annotated by <t>InterProScan.</t> All the DE genes were grouped according to the pfam domain and plotted the top six gene families showing major response against heat stress in P. ginseng .
Interproscan, supplied by Biomatters Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Unigene interproscan
Comparative transcriptome of CP and YP cultivars. (A) Venn diagram depicts number of differential expressed (DE) genes commonly found in both CP and YP cultivars. A total of 883 and 448 genes were DE during heat stress in CP and YP, respectively. A set of 329 genes showed similar expression pattern in both CP and YP cultivars during heat stress. (B) Classification of DE genes based on their Pfam domain annotated by <t>InterProScan.</t> All the DE genes were grouped according to the pfam domain and plotted the top six gene families showing major response against heat stress in P. ginseng .
Interproscan, supplied by Unigene, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


Comparative transcriptome of CP and YP cultivars. (A) Venn diagram depicts number of differential expressed (DE) genes commonly found in both CP and YP cultivars. A total of 883 and 448 genes were DE during heat stress in CP and YP, respectively. A set of 329 genes showed similar expression pattern in both CP and YP cultivars during heat stress. (B) Classification of DE genes based on their Pfam domain annotated by InterProScan. All the DE genes were grouped according to the pfam domain and plotted the top six gene families showing major response against heat stress in P. ginseng .

Journal: Journal of Ginseng Research

Article Title: Comparative transcriptome analysis of heat stress responsiveness between two contrasting ginseng cultivars

doi: 10.1016/j.jgr.2018.05.007

Figure Lengend Snippet: Comparative transcriptome of CP and YP cultivars. (A) Venn diagram depicts number of differential expressed (DE) genes commonly found in both CP and YP cultivars. A total of 883 and 448 genes were DE during heat stress in CP and YP, respectively. A set of 329 genes showed similar expression pattern in both CP and YP cultivars during heat stress. (B) Classification of DE genes based on their Pfam domain annotated by InterProScan. All the DE genes were grouped according to the pfam domain and plotted the top six gene families showing major response against heat stress in P. ginseng .

Article Snippet: Additionally, functional descriptions for each DE genes obtained from BLAST search against NCBI NR and Arabidopsis (TAIR) protein database and Interpro annotation by InterProScan were included.

Techniques: Expressing