deseq2 Search Results


bioconductor package deseq2 1.40.2  (RStudio)
90
RStudio bioconductor package deseq2 1.40.2
Bioconductor Package Deseq2 1.40.2, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/deseq2/pm40169980-89-13-18?v=RStudio
Average 90 stars, based on 1 article reviews
bioconductor package deseq2 1.40.2 - by Bioz Stars, 2026-06
90/100 stars
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deseq2  (Broad Institute Inc)
90
Broad Institute Inc deseq2
Cas9 globally regulates the GBS genome. RNA-Seq analysis was performed on RNA isolated from COH1 and COH1Δ cas9 cultures grown in THB to early-, mid- and late-log growth phases (OD 600 = 0.2, 0.5, and 1.0, respectively). Three biological replicates were analyzed for each strain. Volcano plots indicate combined analysis from <t>DESeq2</t> and EdgeR at (A) OD 600 = 0.2, (B) OD 600 = 0.5, and (C) OD 600 = 1.0. Red dots indicate hits that were significantly dysregulated ( p < 0.05, fold change >±2). Gray dots indicate non-significant hits. (D) Total number of dysregulated genes between COH1 and COH1Δ cas9 strains at each growth phase by Venn diagram. The Venn diagram on the left indicates the number of genes that are up-regulated in the Δ cas9 mutant compared to WT COH1 and the Venn diagram on the right indicates the number of genes that are down-regulated in the Δ cas9 mutant compared to WT COH1. (E) Clusters of Orthologous Groups of proteins designations assigned to significantly dysregulated genes in the Δ cas9 mutant compared to WT COH1, as assigned by Integrated Microbial Genomes & Microbiomes (IMG/M) system at the JGI. Bars to the left indicate genes that are down-regulated in the Δ cas9 mutant compared to WT COH1, whereas bars to the right indicate genes that are up-regulated in the Δ cas9 mutant compared to WT COH1.
Deseq2, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/deseq2/pmc06712506-71-21-9?v=Broad+Institute+Inc
Average 90 stars, based on 1 article reviews
deseq2 - by Bioz Stars, 2026-06
90/100 stars
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deseq2 rna  (Promega)
90
Promega deseq2 rna
Cas9 globally regulates the GBS genome. RNA-Seq analysis was performed on RNA isolated from COH1 and COH1Δ cas9 cultures grown in THB to early-, mid- and late-log growth phases (OD 600 = 0.2, 0.5, and 1.0, respectively). Three biological replicates were analyzed for each strain. Volcano plots indicate combined analysis from <t>DESeq2</t> and EdgeR at (A) OD 600 = 0.2, (B) OD 600 = 0.5, and (C) OD 600 = 1.0. Red dots indicate hits that were significantly dysregulated ( p < 0.05, fold change >±2). Gray dots indicate non-significant hits. (D) Total number of dysregulated genes between COH1 and COH1Δ cas9 strains at each growth phase by Venn diagram. The Venn diagram on the left indicates the number of genes that are up-regulated in the Δ cas9 mutant compared to WT COH1 and the Venn diagram on the right indicates the number of genes that are down-regulated in the Δ cas9 mutant compared to WT COH1. (E) Clusters of Orthologous Groups of proteins designations assigned to significantly dysregulated genes in the Δ cas9 mutant compared to WT COH1, as assigned by Integrated Microbial Genomes & Microbiomes (IMG/M) system at the JGI. Bars to the left indicate genes that are down-regulated in the Δ cas9 mutant compared to WT COH1, whereas bars to the right indicate genes that are up-regulated in the Δ cas9 mutant compared to WT COH1.
Deseq2 Rna, supplied by Promega, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/deseq2/pm36009798-86-3-10?v=Promega
Average 90 stars, based on 1 article reviews
deseq2 rna - by Bioz Stars, 2026-06
90/100 stars
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deseq2.18  (Active Motif)
90
Active Motif deseq2.18
Cas9 globally regulates the GBS genome. RNA-Seq analysis was performed on RNA isolated from COH1 and COH1Δ cas9 cultures grown in THB to early-, mid- and late-log growth phases (OD 600 = 0.2, 0.5, and 1.0, respectively). Three biological replicates were analyzed for each strain. Volcano plots indicate combined analysis from <t>DESeq2</t> and EdgeR at (A) OD 600 = 0.2, (B) OD 600 = 0.5, and (C) OD 600 = 1.0. Red dots indicate hits that were significantly dysregulated ( p < 0.05, fold change >±2). Gray dots indicate non-significant hits. (D) Total number of dysregulated genes between COH1 and COH1Δ cas9 strains at each growth phase by Venn diagram. The Venn diagram on the left indicates the number of genes that are up-regulated in the Δ cas9 mutant compared to WT COH1 and the Venn diagram on the right indicates the number of genes that are down-regulated in the Δ cas9 mutant compared to WT COH1. (E) Clusters of Orthologous Groups of proteins designations assigned to significantly dysregulated genes in the Δ cas9 mutant compared to WT COH1, as assigned by Integrated Microbial Genomes & Microbiomes (IMG/M) system at the JGI. Bars to the left indicate genes that are down-regulated in the Δ cas9 mutant compared to WT COH1, whereas bars to the right indicate genes that are up-regulated in the Δ cas9 mutant compared to WT COH1.
Deseq2.18, supplied by Active Motif, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/deseq2/pmc11676169-128-11-12?v=Active+Motif
Average 90 stars, based on 1 article reviews
deseq2.18 - by Bioz Stars, 2026-06
90/100 stars
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deseq2 tool  (BioCloud Inc)
90
BioCloud Inc deseq2 tool
Cas9 globally regulates the GBS genome. RNA-Seq analysis was performed on RNA isolated from COH1 and COH1Δ cas9 cultures grown in THB to early-, mid- and late-log growth phases (OD 600 = 0.2, 0.5, and 1.0, respectively). Three biological replicates were analyzed for each strain. Volcano plots indicate combined analysis from <t>DESeq2</t> and EdgeR at (A) OD 600 = 0.2, (B) OD 600 = 0.5, and (C) OD 600 = 1.0. Red dots indicate hits that were significantly dysregulated ( p < 0.05, fold change >±2). Gray dots indicate non-significant hits. (D) Total number of dysregulated genes between COH1 and COH1Δ cas9 strains at each growth phase by Venn diagram. The Venn diagram on the left indicates the number of genes that are up-regulated in the Δ cas9 mutant compared to WT COH1 and the Venn diagram on the right indicates the number of genes that are down-regulated in the Δ cas9 mutant compared to WT COH1. (E) Clusters of Orthologous Groups of proteins designations assigned to significantly dysregulated genes in the Δ cas9 mutant compared to WT COH1, as assigned by Integrated Microbial Genomes & Microbiomes (IMG/M) system at the JGI. Bars to the left indicate genes that are down-regulated in the Δ cas9 mutant compared to WT COH1, whereas bars to the right indicate genes that are up-regulated in the Δ cas9 mutant compared to WT COH1.
Deseq2 Tool, supplied by BioCloud Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/deseq2/pmc11768211-108-8-15?v=BioCloud+Inc
Average 90 stars, based on 1 article reviews
deseq2 tool - by Bioz Stars, 2026-06
90/100 stars
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deseq2  (GraphPad Software Inc)
90
GraphPad Software Inc deseq2
Cas9 globally regulates the GBS genome. RNA-Seq analysis was performed on RNA isolated from COH1 and COH1Δ cas9 cultures grown in THB to early-, mid- and late-log growth phases (OD 600 = 0.2, 0.5, and 1.0, respectively). Three biological replicates were analyzed for each strain. Volcano plots indicate combined analysis from <t>DESeq2</t> and EdgeR at (A) OD 600 = 0.2, (B) OD 600 = 0.5, and (C) OD 600 = 1.0. Red dots indicate hits that were significantly dysregulated ( p < 0.05, fold change >±2). Gray dots indicate non-significant hits. (D) Total number of dysregulated genes between COH1 and COH1Δ cas9 strains at each growth phase by Venn diagram. The Venn diagram on the left indicates the number of genes that are up-regulated in the Δ cas9 mutant compared to WT COH1 and the Venn diagram on the right indicates the number of genes that are down-regulated in the Δ cas9 mutant compared to WT COH1. (E) Clusters of Orthologous Groups of proteins designations assigned to significantly dysregulated genes in the Δ cas9 mutant compared to WT COH1, as assigned by Integrated Microbial Genomes & Microbiomes (IMG/M) system at the JGI. Bars to the left indicate genes that are down-regulated in the Δ cas9 mutant compared to WT COH1, whereas bars to the right indicate genes that are up-regulated in the Δ cas9 mutant compared to WT COH1.
Deseq2, supplied by GraphPad Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/deseq2/bio_rxiv__2023__01__12__523776-358-15-25?v=GraphPad+Software+Inc
Average 90 stars, based on 1 article reviews
deseq2 - by Bioz Stars, 2026-06
90/100 stars
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deseq2 package  (HTG Molecular)
90
HTG Molecular deseq2 package
Cas9 globally regulates the GBS genome. RNA-Seq analysis was performed on RNA isolated from COH1 and COH1Δ cas9 cultures grown in THB to early-, mid- and late-log growth phases (OD 600 = 0.2, 0.5, and 1.0, respectively). Three biological replicates were analyzed for each strain. Volcano plots indicate combined analysis from <t>DESeq2</t> and EdgeR at (A) OD 600 = 0.2, (B) OD 600 = 0.5, and (C) OD 600 = 1.0. Red dots indicate hits that were significantly dysregulated ( p < 0.05, fold change >±2). Gray dots indicate non-significant hits. (D) Total number of dysregulated genes between COH1 and COH1Δ cas9 strains at each growth phase by Venn diagram. The Venn diagram on the left indicates the number of genes that are up-regulated in the Δ cas9 mutant compared to WT COH1 and the Venn diagram on the right indicates the number of genes that are down-regulated in the Δ cas9 mutant compared to WT COH1. (E) Clusters of Orthologous Groups of proteins designations assigned to significantly dysregulated genes in the Δ cas9 mutant compared to WT COH1, as assigned by Integrated Microbial Genomes & Microbiomes (IMG/M) system at the JGI. Bars to the left indicate genes that are down-regulated in the Δ cas9 mutant compared to WT COH1, whereas bars to the right indicate genes that are up-regulated in the Δ cas9 mutant compared to WT COH1.
Deseq2 Package, supplied by HTG Molecular, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/deseq2/pm36230659-99-9-13?v=HTG+Molecular
Average 90 stars, based on 1 article reviews
deseq2 package - by Bioz Stars, 2026-06
90/100 stars
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deseq2 r script extension  (Bluebee Inc)
90
Bluebee Inc deseq2 r script extension
Cas9 globally regulates the GBS genome. RNA-Seq analysis was performed on RNA isolated from COH1 and COH1Δ cas9 cultures grown in THB to early-, mid- and late-log growth phases (OD 600 = 0.2, 0.5, and 1.0, respectively). Three biological replicates were analyzed for each strain. Volcano plots indicate combined analysis from <t>DESeq2</t> and EdgeR at (A) OD 600 = 0.2, (B) OD 600 = 0.5, and (C) OD 600 = 1.0. Red dots indicate hits that were significantly dysregulated ( p < 0.05, fold change >±2). Gray dots indicate non-significant hits. (D) Total number of dysregulated genes between COH1 and COH1Δ cas9 strains at each growth phase by Venn diagram. The Venn diagram on the left indicates the number of genes that are up-regulated in the Δ cas9 mutant compared to WT COH1 and the Venn diagram on the right indicates the number of genes that are down-regulated in the Δ cas9 mutant compared to WT COH1. (E) Clusters of Orthologous Groups of proteins designations assigned to significantly dysregulated genes in the Δ cas9 mutant compared to WT COH1, as assigned by Integrated Microbial Genomes & Microbiomes (IMG/M) system at the JGI. Bars to the left indicate genes that are down-regulated in the Δ cas9 mutant compared to WT COH1, whereas bars to the right indicate genes that are up-regulated in the Δ cas9 mutant compared to WT COH1.
Deseq2 R Script Extension, supplied by Bluebee Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/deseq2/pm37108244-426-14-19?v=Bluebee+Inc
Average 90 stars, based on 1 article reviews
deseq2 r script extension - by Bioz Stars, 2026-06
90/100 stars
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deseq2 analysis omicsoft studio 11  (OmicSoft Corporation)
90
OmicSoft Corporation deseq2 analysis omicsoft studio 11
Cas9 globally regulates the GBS genome. RNA-Seq analysis was performed on RNA isolated from COH1 and COH1Δ cas9 cultures grown in THB to early-, mid- and late-log growth phases (OD 600 = 0.2, 0.5, and 1.0, respectively). Three biological replicates were analyzed for each strain. Volcano plots indicate combined analysis from <t>DESeq2</t> and EdgeR at (A) OD 600 = 0.2, (B) OD 600 = 0.5, and (C) OD 600 = 1.0. Red dots indicate hits that were significantly dysregulated ( p < 0.05, fold change >±2). Gray dots indicate non-significant hits. (D) Total number of dysregulated genes between COH1 and COH1Δ cas9 strains at each growth phase by Venn diagram. The Venn diagram on the left indicates the number of genes that are up-regulated in the Δ cas9 mutant compared to WT COH1 and the Venn diagram on the right indicates the number of genes that are down-regulated in the Δ cas9 mutant compared to WT COH1. (E) Clusters of Orthologous Groups of proteins designations assigned to significantly dysregulated genes in the Δ cas9 mutant compared to WT COH1, as assigned by Integrated Microbial Genomes & Microbiomes (IMG/M) system at the JGI. Bars to the left indicate genes that are down-regulated in the Δ cas9 mutant compared to WT COH1, whereas bars to the right indicate genes that are up-regulated in the Δ cas9 mutant compared to WT COH1.
Deseq2 Analysis Omicsoft Studio 11, supplied by OmicSoft Corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/deseq2/pmc09865116-87-13-15?v=OmicSoft+Corporation
Average 90 stars, based on 1 article reviews
deseq2 analysis omicsoft studio 11 - by Bioz Stars, 2026-06
90/100 stars
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deseq2 software  (Peter Huber Kaltemaschinenbau)
90
Peter Huber Kaltemaschinenbau deseq2 software
Cas9 globally regulates the GBS genome. RNA-Seq analysis was performed on RNA isolated from COH1 and COH1Δ cas9 cultures grown in THB to early-, mid- and late-log growth phases (OD 600 = 0.2, 0.5, and 1.0, respectively). Three biological replicates were analyzed for each strain. Volcano plots indicate combined analysis from <t>DESeq2</t> and EdgeR at (A) OD 600 = 0.2, (B) OD 600 = 0.5, and (C) OD 600 = 1.0. Red dots indicate hits that were significantly dysregulated ( p < 0.05, fold change >±2). Gray dots indicate non-significant hits. (D) Total number of dysregulated genes between COH1 and COH1Δ cas9 strains at each growth phase by Venn diagram. The Venn diagram on the left indicates the number of genes that are up-regulated in the Δ cas9 mutant compared to WT COH1 and the Venn diagram on the right indicates the number of genes that are down-regulated in the Δ cas9 mutant compared to WT COH1. (E) Clusters of Orthologous Groups of proteins designations assigned to significantly dysregulated genes in the Δ cas9 mutant compared to WT COH1, as assigned by Integrated Microbial Genomes & Microbiomes (IMG/M) system at the JGI. Bars to the left indicate genes that are down-regulated in the Δ cas9 mutant compared to WT COH1, whereas bars to the right indicate genes that are up-regulated in the Δ cas9 mutant compared to WT COH1.
Deseq2 Software, supplied by Peter Huber Kaltemaschinenbau, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/deseq2/10__1097_slash_wnr__0000000000001862-136-7-14?v=Peter+Huber+Kaltemaschinenbau
Average 90 stars, based on 1 article reviews
deseq2 software - by Bioz Stars, 2026-06
90/100 stars
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deseq2 analysis  (BioTuring Inc)
90
BioTuring Inc deseq2 analysis
Cas9 globally regulates the GBS genome. RNA-Seq analysis was performed on RNA isolated from COH1 and COH1Δ cas9 cultures grown in THB to early-, mid- and late-log growth phases (OD 600 = 0.2, 0.5, and 1.0, respectively). Three biological replicates were analyzed for each strain. Volcano plots indicate combined analysis from <t>DESeq2</t> and EdgeR at (A) OD 600 = 0.2, (B) OD 600 = 0.5, and (C) OD 600 = 1.0. Red dots indicate hits that were significantly dysregulated ( p < 0.05, fold change >±2). Gray dots indicate non-significant hits. (D) Total number of dysregulated genes between COH1 and COH1Δ cas9 strains at each growth phase by Venn diagram. The Venn diagram on the left indicates the number of genes that are up-regulated in the Δ cas9 mutant compared to WT COH1 and the Venn diagram on the right indicates the number of genes that are down-regulated in the Δ cas9 mutant compared to WT COH1. (E) Clusters of Orthologous Groups of proteins designations assigned to significantly dysregulated genes in the Δ cas9 mutant compared to WT COH1, as assigned by Integrated Microbial Genomes & Microbiomes (IMG/M) system at the JGI. Bars to the left indicate genes that are down-regulated in the Δ cas9 mutant compared to WT COH1, whereas bars to the right indicate genes that are up-regulated in the Δ cas9 mutant compared to WT COH1.
Deseq2 Analysis, supplied by BioTuring Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/deseq2/pmc12036103__jcav16p2401s1-3-13-13?v=BioTuring+Inc
Average 90 stars, based on 1 article reviews
deseq2 analysis - by Bioz Stars, 2026-06
90/100 stars
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deseq2 bioconductor package  (GenomeScan)
90
GenomeScan deseq2 bioconductor package
Cas9 globally regulates the GBS genome. RNA-Seq analysis was performed on RNA isolated from COH1 and COH1Δ cas9 cultures grown in THB to early-, mid- and late-log growth phases (OD 600 = 0.2, 0.5, and 1.0, respectively). Three biological replicates were analyzed for each strain. Volcano plots indicate combined analysis from <t>DESeq2</t> and EdgeR at (A) OD 600 = 0.2, (B) OD 600 = 0.5, and (C) OD 600 = 1.0. Red dots indicate hits that were significantly dysregulated ( p < 0.05, fold change >±2). Gray dots indicate non-significant hits. (D) Total number of dysregulated genes between COH1 and COH1Δ cas9 strains at each growth phase by Venn diagram. The Venn diagram on the left indicates the number of genes that are up-regulated in the Δ cas9 mutant compared to WT COH1 and the Venn diagram on the right indicates the number of genes that are down-regulated in the Δ cas9 mutant compared to WT COH1. (E) Clusters of Orthologous Groups of proteins designations assigned to significantly dysregulated genes in the Δ cas9 mutant compared to WT COH1, as assigned by Integrated Microbial Genomes & Microbiomes (IMG/M) system at the JGI. Bars to the left indicate genes that are down-regulated in the Δ cas9 mutant compared to WT COH1, whereas bars to the right indicate genes that are up-regulated in the Δ cas9 mutant compared to WT COH1.
Deseq2 Bioconductor Package, supplied by GenomeScan, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/deseq2/pm39218754-64-22-18?v=GenomeScan
Average 90 stars, based on 1 article reviews
deseq2 bioconductor package - by Bioz Stars, 2026-06
90/100 stars
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Image Search Results


Cas9 globally regulates the GBS genome. RNA-Seq analysis was performed on RNA isolated from COH1 and COH1Δ cas9 cultures grown in THB to early-, mid- and late-log growth phases (OD 600 = 0.2, 0.5, and 1.0, respectively). Three biological replicates were analyzed for each strain. Volcano plots indicate combined analysis from DESeq2 and EdgeR at (A) OD 600 = 0.2, (B) OD 600 = 0.5, and (C) OD 600 = 1.0. Red dots indicate hits that were significantly dysregulated ( p < 0.05, fold change >±2). Gray dots indicate non-significant hits. (D) Total number of dysregulated genes between COH1 and COH1Δ cas9 strains at each growth phase by Venn diagram. The Venn diagram on the left indicates the number of genes that are up-regulated in the Δ cas9 mutant compared to WT COH1 and the Venn diagram on the right indicates the number of genes that are down-regulated in the Δ cas9 mutant compared to WT COH1. (E) Clusters of Orthologous Groups of proteins designations assigned to significantly dysregulated genes in the Δ cas9 mutant compared to WT COH1, as assigned by Integrated Microbial Genomes & Microbiomes (IMG/M) system at the JGI. Bars to the left indicate genes that are down-regulated in the Δ cas9 mutant compared to WT COH1, whereas bars to the right indicate genes that are up-regulated in the Δ cas9 mutant compared to WT COH1.

Journal: Frontiers in Microbiology

Article Title: Cas9 Contributes to Group B Streptococcal Colonization and Disease

doi: 10.3389/fmicb.2019.01930

Figure Lengend Snippet: Cas9 globally regulates the GBS genome. RNA-Seq analysis was performed on RNA isolated from COH1 and COH1Δ cas9 cultures grown in THB to early-, mid- and late-log growth phases (OD 600 = 0.2, 0.5, and 1.0, respectively). Three biological replicates were analyzed for each strain. Volcano plots indicate combined analysis from DESeq2 and EdgeR at (A) OD 600 = 0.2, (B) OD 600 = 0.5, and (C) OD 600 = 1.0. Red dots indicate hits that were significantly dysregulated ( p < 0.05, fold change >±2). Gray dots indicate non-significant hits. (D) Total number of dysregulated genes between COH1 and COH1Δ cas9 strains at each growth phase by Venn diagram. The Venn diagram on the left indicates the number of genes that are up-regulated in the Δ cas9 mutant compared to WT COH1 and the Venn diagram on the right indicates the number of genes that are down-regulated in the Δ cas9 mutant compared to WT COH1. (E) Clusters of Orthologous Groups of proteins designations assigned to significantly dysregulated genes in the Δ cas9 mutant compared to WT COH1, as assigned by Integrated Microbial Genomes & Microbiomes (IMG/M) system at the JGI. Bars to the left indicate genes that are down-regulated in the Δ cas9 mutant compared to WT COH1, whereas bars to the right indicate genes that are up-regulated in the Δ cas9 mutant compared to WT COH1.

Article Snippet: Library construction, sequencing, and analysis were performed at the Broad Institute as described in Methods and analysis was conducted using both DESeq2 and EdgeR ( ).

Techniques: RNA Sequencing, Isolation, Mutagenesis