deseq2 Search Results


deseq2  (DNASTAR)
99
DNASTAR deseq2
Deseq2, supplied by DNASTAR, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/deseq2/product/DNASTAR
Average 99 stars, based on 1 article reviews
deseq2 - by Bioz Stars, 2026-03
99/100 stars
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deseq2  (Qiagen)
90
Qiagen deseq2
Deseq2, supplied by Qiagen, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/deseq2/product/Qiagen
Average 90 stars, based on 1 article reviews
deseq2 - by Bioz Stars, 2026-03
90/100 stars
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deseq2  (RStudio)
90
RStudio deseq2
Deseq2, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/deseq2/product/RStudio
Average 90 stars, based on 1 article reviews
deseq2 - by Bioz Stars, 2026-03
90/100 stars
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deseq2  (Illumina Inc)
90
Illumina Inc deseq2
Deseq2, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/deseq2/product/Illumina Inc
Average 90 stars, based on 1 article reviews
deseq2 - by Bioz Stars, 2026-03
90/100 stars
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deseq2 rna  (Promega)
90
Promega deseq2 rna
Deseq2 Rna, supplied by Promega, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/deseq2 rna/product/Promega
Average 90 stars, based on 1 article reviews
deseq2 rna - by Bioz Stars, 2026-03
90/100 stars
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flow® deseq2  (Partek)
90
Partek flow® deseq2
Loss of skeletal muscle BMAL1 causes rewiring of inflammatory and metabolic pathways across multiple tissues after exercise training. <t>Deseq2</t> normalized counts were used to produce within tissue Z-scores for all expressed genes for all 4 experimental groups. Average Z-scores were then produced from all genes found within the given KEGG pathway for vehicle exercise trained (gray bars) and iMSBmal1KO exercise trained mice (dark blue bars) for each tissue. Tissues are indicated by green bars (Gastrocnemius Muscle), light blue bars (iWAT), yellow bars (Liver), red bars (Heart) and purple bars (Lung). Data is presented for KEGG pathways related to (A) the Immune System, (B) Endocrine System and (C) Amino Acid, Carbohydrate and Lipid Metabolism. Blue signifies relative upregulation of associated pathways and red signifies relative downregulation of the genes within the associated pathways.
Flow® Deseq2, supplied by Partek, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/flow® deseq2/product/Partek
Average 90 stars, based on 1 article reviews
flow® deseq2 - by Bioz Stars, 2026-03
90/100 stars
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deseq2 package (version 1.44)  (Novogene)
90
Novogene deseq2 package (version 1.44)
Loss of skeletal muscle BMAL1 causes rewiring of inflammatory and metabolic pathways across multiple tissues after exercise training. <t>Deseq2</t> normalized counts were used to produce within tissue Z-scores for all expressed genes for all 4 experimental groups. Average Z-scores were then produced from all genes found within the given KEGG pathway for vehicle exercise trained (gray bars) and iMSBmal1KO exercise trained mice (dark blue bars) for each tissue. Tissues are indicated by green bars (Gastrocnemius Muscle), light blue bars (iWAT), yellow bars (Liver), red bars (Heart) and purple bars (Lung). Data is presented for KEGG pathways related to (A) the Immune System, (B) Endocrine System and (C) Amino Acid, Carbohydrate and Lipid Metabolism. Blue signifies relative upregulation of associated pathways and red signifies relative downregulation of the genes within the associated pathways.
Deseq2 Package (Version 1.44), supplied by Novogene, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/deseq2 package (version 1.44)/product/Novogene
Average 90 stars, based on 1 article reviews
deseq2 package (version 1.44) - by Bioz Stars, 2026-03
90/100 stars
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deseq2 normalized count data  (Broad Institute Inc)
90
Broad Institute Inc deseq2 normalized count data
Loss of skeletal muscle BMAL1 causes rewiring of inflammatory and metabolic pathways across multiple tissues after exercise training. <t>Deseq2</t> normalized counts were used to produce within tissue Z-scores for all expressed genes for all 4 experimental groups. Average Z-scores were then produced from all genes found within the given KEGG pathway for vehicle exercise trained (gray bars) and iMSBmal1KO exercise trained mice (dark blue bars) for each tissue. Tissues are indicated by green bars (Gastrocnemius Muscle), light blue bars (iWAT), yellow bars (Liver), red bars (Heart) and purple bars (Lung). Data is presented for KEGG pathways related to (A) the Immune System, (B) Endocrine System and (C) Amino Acid, Carbohydrate and Lipid Metabolism. Blue signifies relative upregulation of associated pathways and red signifies relative downregulation of the genes within the associated pathways.
Deseq2 Normalized Count Data, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/deseq2 normalized count data/product/Broad Institute Inc
Average 90 stars, based on 1 article reviews
deseq2 normalized count data - by Bioz Stars, 2026-03
90/100 stars
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deseq2.18  (Active Motif)
90
Active Motif deseq2.18
Loss of skeletal muscle BMAL1 causes rewiring of inflammatory and metabolic pathways across multiple tissues after exercise training. <t>Deseq2</t> normalized counts were used to produce within tissue Z-scores for all expressed genes for all 4 experimental groups. Average Z-scores were then produced from all genes found within the given KEGG pathway for vehicle exercise trained (gray bars) and iMSBmal1KO exercise trained mice (dark blue bars) for each tissue. Tissues are indicated by green bars (Gastrocnemius Muscle), light blue bars (iWAT), yellow bars (Liver), red bars (Heart) and purple bars (Lung). Data is presented for KEGG pathways related to (A) the Immune System, (B) Endocrine System and (C) Amino Acid, Carbohydrate and Lipid Metabolism. Blue signifies relative upregulation of associated pathways and red signifies relative downregulation of the genes within the associated pathways.
Deseq2.18, supplied by Active Motif, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/deseq2.18/product/Active Motif
Average 90 stars, based on 1 article reviews
deseq2.18 - by Bioz Stars, 2026-03
90/100 stars
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deseq2 tool  (BioCloud Inc)
90
BioCloud Inc deseq2 tool
Loss of skeletal muscle BMAL1 causes rewiring of inflammatory and metabolic pathways across multiple tissues after exercise training. <t>Deseq2</t> normalized counts were used to produce within tissue Z-scores for all expressed genes for all 4 experimental groups. Average Z-scores were then produced from all genes found within the given KEGG pathway for vehicle exercise trained (gray bars) and iMSBmal1KO exercise trained mice (dark blue bars) for each tissue. Tissues are indicated by green bars (Gastrocnemius Muscle), light blue bars (iWAT), yellow bars (Liver), red bars (Heart) and purple bars (Lung). Data is presented for KEGG pathways related to (A) the Immune System, (B) Endocrine System and (C) Amino Acid, Carbohydrate and Lipid Metabolism. Blue signifies relative upregulation of associated pathways and red signifies relative downregulation of the genes within the associated pathways.
Deseq2 Tool, supplied by BioCloud Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/deseq2 tool/product/BioCloud Inc
Average 90 stars, based on 1 article reviews
deseq2 tool - by Bioz Stars, 2026-03
90/100 stars
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deseq2  (GraphPad Software Inc)
90
GraphPad Software Inc deseq2
Loss of skeletal muscle BMAL1 causes rewiring of inflammatory and metabolic pathways across multiple tissues after exercise training. <t>Deseq2</t> normalized counts were used to produce within tissue Z-scores for all expressed genes for all 4 experimental groups. Average Z-scores were then produced from all genes found within the given KEGG pathway for vehicle exercise trained (gray bars) and iMSBmal1KO exercise trained mice (dark blue bars) for each tissue. Tissues are indicated by green bars (Gastrocnemius Muscle), light blue bars (iWAT), yellow bars (Liver), red bars (Heart) and purple bars (Lung). Data is presented for KEGG pathways related to (A) the Immune System, (B) Endocrine System and (C) Amino Acid, Carbohydrate and Lipid Metabolism. Blue signifies relative upregulation of associated pathways and red signifies relative downregulation of the genes within the associated pathways.
Deseq2, supplied by GraphPad Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/deseq2/product/GraphPad Software Inc
Average 90 stars, based on 1 article reviews
deseq2 - by Bioz Stars, 2026-03
90/100 stars
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processing of rna-seq data  (Biostatistical Consulting)
90
Biostatistical Consulting processing of rna-seq data
Loss of skeletal muscle BMAL1 causes rewiring of inflammatory and metabolic pathways across multiple tissues after exercise training. <t>Deseq2</t> normalized counts were used to produce within tissue Z-scores for all expressed genes for all 4 experimental groups. Average Z-scores were then produced from all genes found within the given KEGG pathway for vehicle exercise trained (gray bars) and iMSBmal1KO exercise trained mice (dark blue bars) for each tissue. Tissues are indicated by green bars (Gastrocnemius Muscle), light blue bars (iWAT), yellow bars (Liver), red bars (Heart) and purple bars (Lung). Data is presented for KEGG pathways related to (A) the Immune System, (B) Endocrine System and (C) Amino Acid, Carbohydrate and Lipid Metabolism. Blue signifies relative upregulation of associated pathways and red signifies relative downregulation of the genes within the associated pathways.
Processing Of Rna Seq Data, supplied by Biostatistical Consulting, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/processing of rna-seq data/product/Biostatistical Consulting
Average 90 stars, based on 1 article reviews
processing of rna-seq data - by Bioz Stars, 2026-03
90/100 stars
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Image Search Results


Loss of skeletal muscle BMAL1 causes rewiring of inflammatory and metabolic pathways across multiple tissues after exercise training. Deseq2 normalized counts were used to produce within tissue Z-scores for all expressed genes for all 4 experimental groups. Average Z-scores were then produced from all genes found within the given KEGG pathway for vehicle exercise trained (gray bars) and iMSBmal1KO exercise trained mice (dark blue bars) for each tissue. Tissues are indicated by green bars (Gastrocnemius Muscle), light blue bars (iWAT), yellow bars (Liver), red bars (Heart) and purple bars (Lung). Data is presented for KEGG pathways related to (A) the Immune System, (B) Endocrine System and (C) Amino Acid, Carbohydrate and Lipid Metabolism. Blue signifies relative upregulation of associated pathways and red signifies relative downregulation of the genes within the associated pathways.

Journal: Molecular Metabolism

Article Title: Skeletal muscle BMAL1 is necessary for transcriptional adaptation of local and peripheral tissues in response to endurance exercise training

doi: 10.1016/j.molmet.2024.101980

Figure Lengend Snippet: Loss of skeletal muscle BMAL1 causes rewiring of inflammatory and metabolic pathways across multiple tissues after exercise training. Deseq2 normalized counts were used to produce within tissue Z-scores for all expressed genes for all 4 experimental groups. Average Z-scores were then produced from all genes found within the given KEGG pathway for vehicle exercise trained (gray bars) and iMSBmal1KO exercise trained mice (dark blue bars) for each tissue. Tissues are indicated by green bars (Gastrocnemius Muscle), light blue bars (iWAT), yellow bars (Liver), red bars (Heart) and purple bars (Lung). Data is presented for KEGG pathways related to (A) the Immune System, (B) Endocrine System and (C) Amino Acid, Carbohydrate and Lipid Metabolism. Blue signifies relative upregulation of associated pathways and red signifies relative downregulation of the genes within the associated pathways.

Article Snippet: Differentially expressed genes (DEGs) were identified through the Partek® Flow® DESeq2 binomial generalized linear model with Wald testing for significance between conditions.

Techniques: Produced