Journal: Biomedicines

Article Title: H 2 S Prodrug, SG-1002, Protects against Myocardial Oxidative Damage and Hypertrophy In Vitro via Induction of Cystathionine β-Synthase and Antioxidant Proteins

doi: 10.3390/biomedicines11020612

Figure Lengend Snippet: Reduction of oxidative stress in HL-1 cells by SG-1002. Oxidative stress was measured by determining the levels of AOPP ( A ) and ROS ( B ) in cultured HL-1 cells after tread with specific reagents as described in Materials and Methods. The experiment was repeated at least three times to verify the reproducibility. *, and **, p < 0.05 vs. control; #, p < 0.05 SG-1002 vs. H 2 O 2 ; ##, p < 0.05 H 2 O 2 vs. SG-1002 + H 2 O 2 ; ***, p < 0.05 SG-1002 vs. SG-1002 + H 2 O 2 (Anova) (n = 4).

Article Snippet: Advanced oxidative protein products AOPP Assay Kit was obtained from Abcam (ab242295).

Techniques: Cell Culture, Control

Journal: Journal of Molecular Medicine (Berlin, Germany)

Article Title: Impact of HOMER2 frameshift extension variant on auditory function and development

doi: 10.1007/s00109-025-02556-7

Figure Lengend Snippet: Pedigree, audiometric profile, genetic analysis, and post-cochlear implantation speech outcomes from SB1190-1923 (F/61). a Pedigree of SB1190: the proband (F/61) carries the previously unreported, novel HOMER2 variant (c.1033 del (p.Arg345Glu fs *64)) which is associated with DFNA68. Low pLI score (0.01) of HOMER2 suggests that alteration of HOMER2 exerts a pathogenic effect via a mechanism other than loss-of-function. Both parents of SB1190-1923 passed away in their early 70 s without showing any signs of significant hearing loss, and none of the SB1190-1923’s children exhibited any symptoms of hearing loss. b Preoperative pure tone audiograms show profound down-sloping sensorineural hearing loss with 8% speech discrimination score bilaterally. c Post-Cochlear Implantation speech outcome speech recognition improves significantly at 3- and 6-months post-implantation across various syllable and sentence conditions. F , female; pLI , intolerant; CI , cochlear implantation

Article Snippet: The HOMER2 tagged ORF clone ( NM_199330 ) was obtained from OriGene (RC223154).

Techniques: Variant Assay

Journal: Journal of Molecular Medicine (Berlin, Germany)

Article Title: Impact of HOMER2 frameshift extension variant on auditory function and development

doi: 10.1007/s00109-025-02556-7

Figure Lengend Snippet: Predicted 3D structures of HOMER2 WT and HOMER2 p.R345E fs *64 using AlphaFold2. a Structural alignment of HOMER2 WT and HOMER2 p.R345E fs *64. The EVH1 domain is highlighted in the yellow area, and the coiled-coil (CC) domain is marked by the blue dashed line. a1 The hydrogen bond between N43 and A113 is disrupted in HOMER2 p.R345E fs *64 compared to HOMER2 WT. a2 The β-sheet structure in HOMER2 p.R345E fs *64 extends to F90, and a hydrogen bond forms between F74 and S71, which is absent in HOMER2 WT. b The structure of the HOMER1 [ NP_004263.1 ] and HOMER2 dimer is shown. HOMER1 is depicted in gray, while HOMER2 WT, HOMER2 p.R345E fs *64, and HOMER2 p.R345* are represented in green, brown, and purple, respectively. The coiled-coil region of HOMER2, which can interact with other proteins, is located at amino acids 307–329 in the WT and is shifted to amino acids 275–297 in the HOMER2 variants. c Structural changes in the EVH1 domain were detected in the HOMER1 WT and HOMER2 variants dimer. The distance between each EVH1 domain of HOMER1 and HOMER2 p.R345E fs *64 was reduced ( b ) compared to the WT, which is shifted vertically. In HOMER1 WT and HOMER2 p.R345* dimer, the distance between each EVH1 was increased ( b ) and slightly shifted vertically. d The predicted tetramer structures were obtained using HOMER1 and HOMER2. Two HOMER1 proteins were combined with two HOMER2 WT, two HOMER2 p.R345E fs *64, or two HOMER2 p.R345* molecules. In the HOMER1 and HOMER2 p.R345E fs *64 tetramer, the location of the EVH1 domain of HOMER1 was altered, and the C-terminal of HOMER2 approached the EVH1 domain of HOMER2 (dashed black box). In the HOMER1 and HOMER2 p.R345* tetramer, HOMER1 and HOMER2 formed homodimers, and each homodimer formed a tetramer, unlike the other configurations. WT , wild-type; R , arginine; E , glutamate; fs , frameshift; EVH1 , Ena/Vasp homology domain 1; F , phenylalanine; S , serine; N , asparagine; A , alanine

Article Snippet: The HOMER2 tagged ORF clone ( NM_199330 ) was obtained from OriGene (RC223154).

Techniques:

Journal: Journal of Molecular Medicine (Berlin, Germany)

Article Title: Impact of HOMER2 frameshift extension variant on auditory function and development

doi: 10.1007/s00109-025-02556-7

Figure Lengend Snippet: Cardiac and morphological defects in zebrafish larvae injected with HOMER2 mRNA. a Representative images of zebrafish larvae at 3 dpf displaying varying degrees of heart malformations. The larvae were categorized into four groups: normal, mild, and severe heart defects based on the degree of cardiac enlargement, and an additional group with general abnormal morphology. The categories include normal, mild, and severe heart defects, with red arrowheads marking the regions of cardiac deformity. Additionally, larvae with abnormal overall morphology are shown. b Bar graph illustrating the distribution of larvae with heart and morphological abnormalities in the different experimental groups: uninjected control, RFP control, HOMER2 WT, HOMER2 p.R345*, and HOMER2 p.R345E fs *64. Chi-squared analysis was used to compare the proportions of defects between groups, with significant differences indicated. (**** p < 0.0001, *** p < 0.001, ** p < 0.01, * p < 0.05). n = 100 per group. dpf , days post-fertilization; RFP , red fluorescent protein; WT , wild-type; R , arginine; E , glutamate; fs , frameshift

Article Snippet: The HOMER2 tagged ORF clone ( NM_199330 ) was obtained from OriGene (RC223154).

Techniques: Injection, Control

Journal: Journal of Molecular Medicine (Berlin, Germany)

Article Title: Impact of HOMER2 frameshift extension variant on auditory function and development

doi: 10.1007/s00109-025-02556-7

Figure Lengend Snippet: Otic capsule area in zebrafish larvae at 3 days post-fertilization. a Representative image of 3 dpf zebrafish larvae, with the otic capsule indicated by a red dashed circle. b Bar graph showing the measured otic capsule area in control, RFP control, HOMER2 WT, HOMER2 p.R345*, and HOMER2 p.R345E fs *64 groups. No statistically significant differences were observed between groups ( p > 0.05). n = 15 per group. dpf , days post-fertilization; RFP , red fluorescent protein; WT , wild-type; R , arginine; E , glutamate; fs , frameshift

Article Snippet: The HOMER2 tagged ORF clone ( NM_199330 ) was obtained from OriGene (RC223154).

Techniques: Control

Journal: Journal of Molecular Medicine (Berlin, Germany)

Article Title: Impact of HOMER2 frameshift extension variant on auditory function and development

doi: 10.1007/s00109-025-02556-7

Figure Lengend Snippet: Analysis of hair cell numbers in zebrafish neuromasts. a Representative image of the four neuromasts (SO1, SO2, O1, and OC1) from each group: control, RFP control, HOMER2 WT, HOMER2 p.R345*, and HOMER2 p.R345E fs *64. b Bar graph comparing each group's average number of hair cells across the four neuromasts. No statistically significant differences were observed between the groups ( p > 0.05). n = 10 per group. SO1 , supraorbital1; SO2 , supraorbital2; O1 , otic; OC1 , occipital; RFP , red fluorescent protein; WT , wild-type; R , arginine; E , glutamate; fs , frameshift

Article Snippet: The HOMER2 tagged ORF clone ( NM_199330 ) was obtained from OriGene (RC223154).

Techniques: Control

Journal: Journal of Molecular Medicine (Berlin, Germany)

Article Title: Impact of HOMER2 frameshift extension variant on auditory function and development

doi: 10.1007/s00109-025-02556-7

Figure Lengend Snippet: Comparison of FM1-43 uptake in zebrafish neuromast hair cells. a Representative image of neuromast hair cells in control, RFP control, HOMER2 WT, and HOMER2 variant groups. Hair cells are labeled with GFP, and FM1-43 uptake is indicated by mCherry fluorescence. b Bar graph comparing the fluorescence intensity of FM1-43 uptake across groups. While no significant differences were observed between the control, RFP, and HOMER2 WT groups, the HOMER2 variant groups showed a statistically significant reduction in intensity compared to the RFP group (* p < 0.05, ** p < 0.01). n = 5 per group. RFP , red fluorescent protein; WT , wild-type

Article Snippet: The HOMER2 tagged ORF clone ( NM_199330 ) was obtained from OriGene (RC223154).

Techniques: Comparison, Control, Variant Assay, Labeling, Fluorescence

Journal: Journal of Molecular Medicine (Berlin, Germany)

Article Title: Impact of HOMER2 frameshift extension variant on auditory function and development

doi: 10.1007/s00109-025-02556-7

Figure Lengend Snippet: Comparison of startle reflex in zebrafish larvae at 6 days post-fertilization. a Bar graph depicting the latency (time from stimulus application to the onset of movement) across the control, RFP control, HOMER2 WT, HOMER2 p.R345*, and HOMER2 p.R345E fs *64 groups. The latency was significantly longer in the HOMER2 p.R345E fs *64 group compared to HOMER2 WT ( p < 0.05). b Bar graph showing the distance moved during the startle response. The HOMER2 p.R345E fs *64 groups exhibited a significant reduction in distance moved compared to HOMER2 WT and p.R345*, and showed a further reduction relative to the RFP control group ( p < 0.05). n = 20 per group. RFP , red fluorescent protein; WT , wild-type; R , arginine; E , glutamate; fs , frameshift

Article Snippet: The HOMER2 tagged ORF clone ( NM_199330 ) was obtained from OriGene (RC223154).

Techniques: Comparison, Control

Journal: Journal of molecular and cellular cardiology

Article Title: Stem Cell Factor is Responsible for the Rapid Response in Mature Mast Cell Density in the Acutely Stressed Heart

doi: 10.1016/j.yjmcc.2012.07.011

Figure Lengend Snippet: Stem cell factor (SCF) concentration in left ventricular (LV) tissue slices (3A) and the conditioned medium (3B) and mature mast cell (MC) density (3C) that were incubated with media alone (control), compound 48/80 (20 μg/ml), or 48/80 plus chymostatin for 16 hrs. SCF levels in LV tissue slices and culture media were normalized with total protein and tissue slice weight, respectively, and are presented as mean ± SEM. Number within bars represents the number of rat hearts in the group. * p < 0.01 vs. control and chymostatin groups.

Article Snippet: To determine the effects of the MC degranulation on SCF levels, LV slices from each heart were randomly separated into three groups with five or more slices per well: 1) culture media alone; 2) culture media with the MC secretagogue, compound 48/80 (20 μg/ml; Sigma, St Louis, MO); 3) culture media with compound 48/80 and anti-SCF; and 4) culture media with compound 48/80 and chymostatin (10 μM, MP Biomedicals, Solon, OH).

Techniques: Concentration Assay, Incubation