cophenetic correlation coefficient Search Results


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Heatmaps of ANIm percentage identity between genomes of Tilletia spp. Pairwise average nucleotide identity between two groups of Tilletia species (( A ) T. caries , T. controversa , and T. laevis , ( B ) T. indica and T. walkeri ) were determined by Pyani and used for the construction of a single linkage dendrogram. The isolates and species assignments are given as row and column labels. The value of the <t>cophenetic</t> correlation <t>coefficient</t> of the hierarchical clustering was 0.97 for ( A ) and 0.99 for ( B ).
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Heatmaps of ANIm percentage identity between genomes of Tilletia spp. Pairwise average nucleotide identity between two groups of Tilletia species (( A ) T. caries , T. controversa , and T. laevis , ( B ) T. indica and T. walkeri ) were determined by Pyani and used for the construction of a single linkage dendrogram. The isolates and species assignments are given as row and column labels. The value of the cophenetic correlation coefficient of the hierarchical clustering was 0.97 for ( A ) and 0.99 for ( B ).

Journal: Scientific Reports

Article Title: Development of a loop-mediated isothermal amplification assay for the detection of Tilletia controversa based on genome comparison

doi: 10.1038/s41598-021-91098-2

Figure Lengend Snippet: Heatmaps of ANIm percentage identity between genomes of Tilletia spp. Pairwise average nucleotide identity between two groups of Tilletia species (( A ) T. caries , T. controversa , and T. laevis , ( B ) T. indica and T. walkeri ) were determined by Pyani and used for the construction of a single linkage dendrogram. The isolates and species assignments are given as row and column labels. The value of the cophenetic correlation coefficient of the hierarchical clustering was 0.97 for ( A ) and 0.99 for ( B ).

Article Snippet: The cophenetic correlation coefficient of the hierarchical clustering was calculated in RStudio (Version 1.1.463) .

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