contig assembly Search Results


contigs assembled using codoncode aligner v3.5.4  (CodonCode corporation)
90
CodonCode corporation contigs assembled using codoncode aligner v3.5.4
Contigs Assembled Using Codoncode Aligner V3.5.4, supplied by CodonCode corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/contigs assembled using codoncode aligner v3.5.4/product/CodonCode corporation
Average 90 stars, based on 1 article reviews
contigs assembled using codoncode aligner v3.5.4 - by Bioz Stars, 2026-04
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contig assembly program version 7.0.9.0  (Bioedit Company)
90
Bioedit Company contig assembly program version 7.0.9.0
Contig Assembly Program Version 7.0.9.0, supplied by Bioedit Company, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/contig assembly program version 7.0.9.0/product/Bioedit Company
Average 90 stars, based on 1 article reviews
contig assembly program version 7.0.9.0 - by Bioz Stars, 2026-04
90/100 stars
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rad longread ® contig assembly  (Floragenex)
90
Floragenex rad longread ® contig assembly
<t>Contig</t> length distribution and the efficiency of SNP discovery . Red bars represent the portion of contigs having no SNP identified, while green bars represent contigs harbouring at least one SNP.
Rad Longread ® Contig Assembly, supplied by Floragenex, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/rad longread ® contig assembly/product/Floragenex
Average 90 stars, based on 1 article reviews
rad longread ® contig assembly - by Bioz Stars, 2026-04
90/100 stars
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compare assembled contig distributions  (DOE Systems Biology Knowledgebase)
90
DOE Systems Biology Knowledgebase compare assembled contig distributions
<t>Contig</t> length distribution and the efficiency of SNP discovery . Red bars represent the portion of contigs having no SNP identified, while green bars represent contigs harbouring at least one SNP.
Compare Assembled Contig Distributions, supplied by DOE Systems Biology Knowledgebase, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/compare assembled contig distributions/product/DOE Systems Biology Knowledgebase
Average 90 stars, based on 1 article reviews
compare assembled contig distributions - by Bioz Stars, 2026-04
90/100 stars
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contig-assembly hybrid scaffolds  (BioNano Genomics)
90
BioNano Genomics contig-assembly hybrid scaffolds
Experimental <t> assembly </t> comparison.
Contig Assembly Hybrid Scaffolds, supplied by BioNano Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/contig-assembly hybrid scaffolds/product/BioNano Genomics
Average 90 stars, based on 1 article reviews
contig-assembly hybrid scaffolds - by Bioz Stars, 2026-04
90/100 stars
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contig assembling program  (Bioedit Company)
90
Bioedit Company contig assembling program
Experimental <t> assembly </t> comparison.
Contig Assembling Program, supplied by Bioedit Company, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/contig assembling program/product/Bioedit Company
Average 90 stars, based on 1 article reviews
contig assembling program - by Bioz Stars, 2026-04
90/100 stars
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cap contig assembly of bioedit sequence alignment editor software version 7.0.5  (Bioedit Company)
90
Bioedit Company cap contig assembly of bioedit sequence alignment editor software version 7.0.5
Experimental <t> assembly </t> comparison.
Cap Contig Assembly Of Bioedit Sequence Alignment Editor Software Version 7.0.5, supplied by Bioedit Company, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/cap contig assembly of bioedit sequence alignment editor software version 7.0.5/product/Bioedit Company
Average 90 stars, based on 1 article reviews
cap contig assembly of bioedit sequence alignment editor software version 7.0.5 - by Bioz Stars, 2026-04
90/100 stars
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contig assembly  (Gene Codes Inc)
90
Gene Codes Inc contig assembly
Experimental <t> assembly </t> comparison.
Contig Assembly, supplied by Gene Codes Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/contig assembly/product/Gene Codes Inc
Average 90 stars, based on 1 article reviews
contig assembly - by Bioz Stars, 2026-04
90/100 stars
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genome assembly contigs  (Mendeley Ltd)
90
Mendeley Ltd genome assembly contigs
Experimental <t> assembly </t> comparison.
Genome Assembly Contigs, supplied by Mendeley Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/genome assembly contigs/product/Mendeley Ltd
Average 90 stars, based on 1 article reviews
genome assembly contigs - by Bioz Stars, 2026-04
90/100 stars
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contig assembly  (LGC Genomics GmbH)
90
LGC Genomics GmbH contig assembly
Experimental <t> assembly </t> comparison.
Contig Assembly, supplied by LGC Genomics GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/contig assembly/product/LGC Genomics GmbH
Average 90 stars, based on 1 article reviews
contig assembly - by Bioz Stars, 2026-04
90/100 stars
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electropherograms of dna sequences with contig assembly instructions  (LabArchives LLC)
90
LabArchives LLC electropherograms of dna sequences with contig assembly instructions
Experimental <t> assembly </t> comparison.
Electropherograms Of Dna Sequences With Contig Assembly Instructions, supplied by LabArchives LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/electropherograms of dna sequences with contig assembly instructions/product/LabArchives LLC
Average 90 stars, based on 1 article reviews
electropherograms of dna sequences with contig assembly instructions - by Bioz Stars, 2026-04
90/100 stars
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bgi-assembled and -mapped syngenta contigs  (Syngenta)
90
Syngenta bgi-assembled and -mapped syngenta contigs
Experimental <t> assembly </t> comparison.
Bgi Assembled And Mapped Syngenta Contigs, supplied by Syngenta, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/bgi-assembled and -mapped syngenta contigs/product/Syngenta
Average 90 stars, based on 1 article reviews
bgi-assembled and -mapped syngenta contigs - by Bioz Stars, 2026-04
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Image Search Results


Contig length distribution and the efficiency of SNP discovery . Red bars represent the portion of contigs having no SNP identified, while green bars represent contigs harbouring at least one SNP.

Journal: BMC Genomics

Article Title: RAD tag sequencing as a source of SNP markers in Cynara cardunculus L

doi: 10.1186/1471-2164-13-3

Figure Lengend Snippet: Contig length distribution and the efficiency of SNP discovery . Red bars represent the portion of contigs having no SNP identified, while green bars represent contigs harbouring at least one SNP.

Article Snippet: A RAD LongRead ® contig assembly was generated by a set of algorithms developed at Floragenex Inc. Sequences having more than 5 bases with poor Illumina quality scores (Phred10 or lower) were discarded.

Techniques:

Comparison of K-mer spectra in the C. cardunculus RAD contig assembly vs the full genomes of A. thaliana , V. vinifera and F. vesca . K-mer (k = 10) distribution for C. cardunculus (A) was evaluated both on pre-assembly sequence data (outer box) and contig sequences (inner box). K-mer populations have been split on the basis of their CpG content. × axis represents the number of occurrences of a given 10-mer; Y axis reports the amount of different 10-mers reporting that occurrence count.

Journal: BMC Genomics

Article Title: RAD tag sequencing as a source of SNP markers in Cynara cardunculus L

doi: 10.1186/1471-2164-13-3

Figure Lengend Snippet: Comparison of K-mer spectra in the C. cardunculus RAD contig assembly vs the full genomes of A. thaliana , V. vinifera and F. vesca . K-mer (k = 10) distribution for C. cardunculus (A) was evaluated both on pre-assembly sequence data (outer box) and contig sequences (inner box). K-mer populations have been split on the basis of their CpG content. × axis represents the number of occurrences of a given 10-mer; Y axis reports the amount of different 10-mers reporting that occurrence count.

Article Snippet: A RAD LongRead ® contig assembly was generated by a set of algorithms developed at Floragenex Inc. Sequences having more than 5 bases with poor Illumina quality scores (Phred10 or lower) were discarded.

Techniques: Comparison, Sequencing

Experimental assembly comparison.

Journal: Frontiers in Plant Science

Article Title: Representing true plant genomes: haplotype-resolved hybrid pepper genome with trio-binning

doi: 10.3389/fpls.2023.1184112

Figure Lengend Snippet: Experimental assembly comparison.

Article Snippet: Step 4 scaffolded the assemblies to the corresponding Bionano contig-assembly hybrid scaffolds using Ragtag ‘scaffold’.

Techniques: Comparison, Software

Haplotype switching. Haplotype switching was illustrated by aligning TrioCanu binned HiFi reads of parent A (HDA149) and parent B (HDA330) to each contig level genome assembly. The x-axis shows 1 Mb windows across contigs. The contigs were arranged from longest to shortest. Vertical gray lines show the boundaries of contigs. The y-axis shows the difference in percent coverage of the binned reads over a 1 Mb window of the given assembly. Higher coverage of HDA149 is shown in pink and higher coverage of HDA330 is shown in blue. (A) Hifiasm HDA149 assembly with trio-binning. (B) Hifiasm HDA330 assembly with trio-binning. (C) TrioCanu HDA149 assembly with trio-binning. (D) TrioCanu HDA330 assembly with trio-binning. (E) Hifiasm haplotype 1 assembly in default run mode, without parental k-mers for trio-binning. (F) Hifiasm haplotype 2 assembly in default run mode, without parental k-mers for trio-binning.

Journal: Frontiers in Plant Science

Article Title: Representing true plant genomes: haplotype-resolved hybrid pepper genome with trio-binning

doi: 10.3389/fpls.2023.1184112

Figure Lengend Snippet: Haplotype switching. Haplotype switching was illustrated by aligning TrioCanu binned HiFi reads of parent A (HDA149) and parent B (HDA330) to each contig level genome assembly. The x-axis shows 1 Mb windows across contigs. The contigs were arranged from longest to shortest. Vertical gray lines show the boundaries of contigs. The y-axis shows the difference in percent coverage of the binned reads over a 1 Mb window of the given assembly. Higher coverage of HDA149 is shown in pink and higher coverage of HDA330 is shown in blue. (A) Hifiasm HDA149 assembly with trio-binning. (B) Hifiasm HDA330 assembly with trio-binning. (C) TrioCanu HDA149 assembly with trio-binning. (D) TrioCanu HDA330 assembly with trio-binning. (E) Hifiasm haplotype 1 assembly in default run mode, without parental k-mers for trio-binning. (F) Hifiasm haplotype 2 assembly in default run mode, without parental k-mers for trio-binning.

Article Snippet: Step 4 scaffolded the assemblies to the corresponding Bionano contig-assembly hybrid scaffolds using Ragtag ‘scaffold’.

Techniques: