clustalw software Search Results


clustalw alignment macvector 11.1 software  (MacVector inc)
90
MacVector inc clustalw alignment macvector 11.1 software
Variations in MMTV pol gene were observed after 12 wk lamivudine/zidovudine therapy in the NOD.c3c4 mouse. Alignment of amino acid sequence 136-198 of MMTV Pol <t>P03365.2</t> using ClustalW alignment (MacVector 11.1 software) showing the amino acid variations W150R, R176G, Y183H, M188V and L192P in five clones derived from two mice treated with lamivudine/zidovudine that were not observed in control mice on placebo. Variants G160S and D181N were observed in mice receiving placebo and antiretroviral therapy. With permission from Sharon et al[8].
Clustalw Alignment Macvector 11.1 Software, supplied by MacVector inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/clustalw+software/pmc04698497-114-10-14?v=MacVector+inc
Average 90 stars, based on 1 article reviews
clustalw alignment macvector 11.1 software - by Bioz Stars, 2026-07
90/100 stars
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clustalw software program  (MacVector inc)
90
MacVector inc clustalw software program
Sequence characteristics of MTH3-related proteins. A, phylogenic tree of human Nudix family proteins. Structural alignment and the construction of a phylogenic tree were performed using the <t>ClustalW</t> program. NUDT1, NUDT15, and NUDT18 (characterized by their structural features) correspond to MTH1, MTH2, and MTH3, respectively, the names of which were assigned on the basis of their similar biochemical activities. B, comparison of the structures of the MutT family proteins. The numbers correspond to the positions of the amino acid residues from the N termini. The positions of the conserved MutT box are shown by shaded boxes. The relative numbers of amino acid residues identical to those of MTH3 are shown to the right of each sequence.
Clustalw Software Program, supplied by MacVector inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/clustalw+software/pmc03375575-191-11-22?v=MacVector+inc
Average 90 stars, based on 1 article reviews
clustalw software program - by Bioz Stars, 2026-07
90/100 stars
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clustalw software  (Intex Inc)
90
Intex Inc clustalw software
Sequence characteristics of MTH3-related proteins. A, phylogenic tree of human Nudix family proteins. Structural alignment and the construction of a phylogenic tree were performed using the <t>ClustalW</t> program. NUDT1, NUDT15, and NUDT18 (characterized by their structural features) correspond to MTH1, MTH2, and MTH3, respectively, the names of which were assigned on the basis of their similar biochemical activities. B, comparison of the structures of the MutT family proteins. The numbers correspond to the positions of the amino acid residues from the N termini. The positions of the conserved MutT box are shown by shaded boxes. The relative numbers of amino acid residues identical to those of MTH3 are shown to the right of each sequence.
Clustalw Software, supplied by Intex Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/clustalw+software/pmc04373122-51-15-19?v=Intex+Inc
Average 90 stars, based on 1 article reviews
clustalw software - by Bioz Stars, 2026-07
90/100 stars
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clustalw multiple sequence alignment of aqp3 protein isoforms predicted by the ensembl software system  (MBL Life science)
90
MBL Life science clustalw multiple sequence alignment of aqp3 protein isoforms predicted by the ensembl software system
Sequence characteristics of MTH3-related proteins. A, phylogenic tree of human Nudix family proteins. Structural alignment and the construction of a phylogenic tree were performed using the <t>ClustalW</t> program. NUDT1, NUDT15, and NUDT18 (characterized by their structural features) correspond to MTH1, MTH2, and MTH3, respectively, the names of which were assigned on the basis of their similar biochemical activities. B, comparison of the structures of the MutT family proteins. The numbers correspond to the positions of the amino acid residues from the N termini. The positions of the conserved MutT box are shown by shaded boxes. The relative numbers of amino acid residues identical to those of MTH3 are shown to the right of each sequence.
Clustalw Multiple Sequence Alignment Of Aqp3 Protein Isoforms Predicted By The Ensembl Software System, supplied by MBL Life science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/clustalw+software/10__1186_slash_1471___2164___10___s2___s7-128-44-29?v=MBL+Life+science
Average 90 stars, based on 1 article reviews
clustalw multiple sequence alignment of aqp3 protein isoforms predicted by the ensembl software system - by Bioz Stars, 2026-07
90/100 stars
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clustalw alignment tool from macvector software v. 12.7.5  (MacVector inc)
90
MacVector inc clustalw alignment tool from macvector software v. 12.7.5
Sequence characteristics of MTH3-related proteins. A, phylogenic tree of human Nudix family proteins. Structural alignment and the construction of a phylogenic tree were performed using the <t>ClustalW</t> program. NUDT1, NUDT15, and NUDT18 (characterized by their structural features) correspond to MTH1, MTH2, and MTH3, respectively, the names of which were assigned on the basis of their similar biochemical activities. B, comparison of the structures of the MutT family proteins. The numbers correspond to the positions of the amino acid residues from the N termini. The positions of the conserved MutT box are shown by shaded boxes. The relative numbers of amino acid residues identical to those of MTH3 are shown to the right of each sequence.
Clustalw Alignment Tool From Macvector Software V. 12.7.5, supplied by MacVector inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/clustalw+software/10__1074_slash_jbc__ra118__007221-264-20-22?v=MacVector+inc
Average 90 stars, based on 1 article reviews
clustalw alignment tool from macvector software v. 12.7.5 - by Bioz Stars, 2026-07
90/100 stars
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clustalw software  (GENETYX CORPORATION)
90
GENETYX CORPORATION clustalw software
Phylogenetic analysis of the Na+/Ca2+ exchanger (NCX) family. The tree was generated using the neighbor-joining method with <t>ClustalW</t> (48) and MEGA4 (47). The numbers show bootstrap values (1,000 replications). The scale bar represents a genetic distance of 0.05 amino acid substitutions per site. The mefugu (Takifugu obscurus) NCX2a is indicated by a black circle. The GenBank accession nos. of the amino acid sequences used are as follows: human NCX1, P32418; human NCX2, Q9UPR5; human NCX3, NP_150287; mouse NCX1, P70414; mouse NCX2, NP_683748; mouse NCX3, NP_536688; zebrafish NCX1a, NM_001037102; zebrafish NCX1b, NM_001039144; zebrafish NCX2a, NM_001123296; zebrafish NCX2b, NM_001123284; zebrafish NCX3, NM_001123256; zebrafish NCX4a, NM_001089419; zebrafish NCX4b, NM_001123240; torafugu (Takifugu rubripes) NCX1a, CAAB01007576; torafugu NCX1b, CAAB01000103; torafugu NCX2a, CAAB01002497; torafugu NCX2b, CAAB01001252; torafugu NCX3, CAAB01001148; torafugu NCX4a, CAAB01000046; torafugu NCX4b, CAAB01002000; Tetraodon (Tetraodon nigroviridis) NCX1a, CAF93335; Tetraodon NCX1b, CAG00274; Tetraodon NCX2a, AF95011 and AB662956; Tetraodon NCX2b, CAG06357; Tetraodon NCX3, CAG13245; Tetraodon NCX4a, CAG01582; Tetraodon NCX4b, CAG05743; tilapia (Oreochromis mossambicus) NCX1, AAP37041; and mefugu NCX2a, AB663107.
Clustalw Software, supplied by GENETYX CORPORATION, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/clustalw+software/pmc03213929-371-15-21?v=GENETYX+CORPORATION
Average 90 stars, based on 1 article reviews
clustalw software - by Bioz Stars, 2026-07
90/100 stars
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clustalw dnaman software  (Lynnon corporation)
90
Lynnon corporation clustalw dnaman software
Phylogenetic analysis of the Na+/Ca2+ exchanger (NCX) family. The tree was generated using the neighbor-joining method with <t>ClustalW</t> (48) and MEGA4 (47). The numbers show bootstrap values (1,000 replications). The scale bar represents a genetic distance of 0.05 amino acid substitutions per site. The mefugu (Takifugu obscurus) NCX2a is indicated by a black circle. The GenBank accession nos. of the amino acid sequences used are as follows: human NCX1, P32418; human NCX2, Q9UPR5; human NCX3, NP_150287; mouse NCX1, P70414; mouse NCX2, NP_683748; mouse NCX3, NP_536688; zebrafish NCX1a, NM_001037102; zebrafish NCX1b, NM_001039144; zebrafish NCX2a, NM_001123296; zebrafish NCX2b, NM_001123284; zebrafish NCX3, NM_001123256; zebrafish NCX4a, NM_001089419; zebrafish NCX4b, NM_001123240; torafugu (Takifugu rubripes) NCX1a, CAAB01007576; torafugu NCX1b, CAAB01000103; torafugu NCX2a, CAAB01002497; torafugu NCX2b, CAAB01001252; torafugu NCX3, CAAB01001148; torafugu NCX4a, CAAB01000046; torafugu NCX4b, CAAB01002000; Tetraodon (Tetraodon nigroviridis) NCX1a, CAF93335; Tetraodon NCX1b, CAG00274; Tetraodon NCX2a, AF95011 and AB662956; Tetraodon NCX2b, CAG06357; Tetraodon NCX3, CAG13245; Tetraodon NCX4a, CAG01582; Tetraodon NCX4b, CAG05743; tilapia (Oreochromis mossambicus) NCX1, AAP37041; and mefugu NCX2a, AB663107.
Clustalw Dnaman Software, supplied by Lynnon corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/clustalw+software/10__1155_slash_2023_slash_5545806-42-8-9?v=Lynnon+corporation
Average 90 stars, based on 1 article reviews
clustalw dnaman software - by Bioz Stars, 2026-07
90/100 stars
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(clustalw) vector nti advance 9 software  (InfoMax Inc)
90
InfoMax Inc (clustalw) vector nti advance 9 software
Phylogenetic analysis of the Na+/Ca2+ exchanger (NCX) family. The tree was generated using the neighbor-joining method with <t>ClustalW</t> (48) and MEGA4 (47). The numbers show bootstrap values (1,000 replications). The scale bar represents a genetic distance of 0.05 amino acid substitutions per site. The mefugu (Takifugu obscurus) NCX2a is indicated by a black circle. The GenBank accession nos. of the amino acid sequences used are as follows: human NCX1, P32418; human NCX2, Q9UPR5; human NCX3, NP_150287; mouse NCX1, P70414; mouse NCX2, NP_683748; mouse NCX3, NP_536688; zebrafish NCX1a, NM_001037102; zebrafish NCX1b, NM_001039144; zebrafish NCX2a, NM_001123296; zebrafish NCX2b, NM_001123284; zebrafish NCX3, NM_001123256; zebrafish NCX4a, NM_001089419; zebrafish NCX4b, NM_001123240; torafugu (Takifugu rubripes) NCX1a, CAAB01007576; torafugu NCX1b, CAAB01000103; torafugu NCX2a, CAAB01002497; torafugu NCX2b, CAAB01001252; torafugu NCX3, CAAB01001148; torafugu NCX4a, CAAB01000046; torafugu NCX4b, CAAB01002000; Tetraodon (Tetraodon nigroviridis) NCX1a, CAF93335; Tetraodon NCX1b, CAG00274; Tetraodon NCX2a, AF95011 and AB662956; Tetraodon NCX2b, CAG06357; Tetraodon NCX3, CAG13245; Tetraodon NCX4a, CAG01582; Tetraodon NCX4b, CAG05743; tilapia (Oreochromis mossambicus) NCX1, AAP37041; and mefugu NCX2a, AB663107.
(Clustalw) Vector Nti Advance 9 Software, supplied by InfoMax Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/clustalw+software/10__1128_slash_aac__00110___08-48-7-13?v=InfoMax+Inc
Average 90 stars, based on 1 article reviews
(clustalw) vector nti advance 9 software - by Bioz Stars, 2026-07
90/100 stars
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clustalw program with macvector 9.0 software  (MacVector inc)
90
MacVector inc clustalw program with macvector 9.0 software
Phylogenetic analysis of the Na+/Ca2+ exchanger (NCX) family. The tree was generated using the neighbor-joining method with <t>ClustalW</t> (48) and MEGA4 (47). The numbers show bootstrap values (1,000 replications). The scale bar represents a genetic distance of 0.05 amino acid substitutions per site. The mefugu (Takifugu obscurus) NCX2a is indicated by a black circle. The GenBank accession nos. of the amino acid sequences used are as follows: human NCX1, P32418; human NCX2, Q9UPR5; human NCX3, NP_150287; mouse NCX1, P70414; mouse NCX2, NP_683748; mouse NCX3, NP_536688; zebrafish NCX1a, NM_001037102; zebrafish NCX1b, NM_001039144; zebrafish NCX2a, NM_001123296; zebrafish NCX2b, NM_001123284; zebrafish NCX3, NM_001123256; zebrafish NCX4a, NM_001089419; zebrafish NCX4b, NM_001123240; torafugu (Takifugu rubripes) NCX1a, CAAB01007576; torafugu NCX1b, CAAB01000103; torafugu NCX2a, CAAB01002497; torafugu NCX2b, CAAB01001252; torafugu NCX3, CAAB01001148; torafugu NCX4a, CAAB01000046; torafugu NCX4b, CAAB01002000; Tetraodon (Tetraodon nigroviridis) NCX1a, CAF93335; Tetraodon NCX1b, CAG00274; Tetraodon NCX2a, AF95011 and AB662956; Tetraodon NCX2b, CAG06357; Tetraodon NCX3, CAG13245; Tetraodon NCX4a, CAG01582; Tetraodon NCX4b, CAG05743; tilapia (Oreochromis mossambicus) NCX1, AAP37041; and mefugu NCX2a, AB663107.
Clustalw Program With Macvector 9.0 Software, supplied by MacVector inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/clustalw+software/10__1094_slash_pdis___91___11___1413-43-10-9?v=MacVector+inc
Average 90 stars, based on 1 article reviews
clustalw program with macvector 9.0 software - by Bioz Stars, 2026-07
90/100 stars
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vecto nti alignment software with clustalw algorithm  (InforMax Inc)
90
InforMax Inc vecto nti alignment software with clustalw algorithm
Phylogenetic analysis of the Na+/Ca2+ exchanger (NCX) family. The tree was generated using the neighbor-joining method with <t>ClustalW</t> (48) and MEGA4 (47). The numbers show bootstrap values (1,000 replications). The scale bar represents a genetic distance of 0.05 amino acid substitutions per site. The mefugu (Takifugu obscurus) NCX2a is indicated by a black circle. The GenBank accession nos. of the amino acid sequences used are as follows: human NCX1, P32418; human NCX2, Q9UPR5; human NCX3, NP_150287; mouse NCX1, P70414; mouse NCX2, NP_683748; mouse NCX3, NP_536688; zebrafish NCX1a, NM_001037102; zebrafish NCX1b, NM_001039144; zebrafish NCX2a, NM_001123296; zebrafish NCX2b, NM_001123284; zebrafish NCX3, NM_001123256; zebrafish NCX4a, NM_001089419; zebrafish NCX4b, NM_001123240; torafugu (Takifugu rubripes) NCX1a, CAAB01007576; torafugu NCX1b, CAAB01000103; torafugu NCX2a, CAAB01002497; torafugu NCX2b, CAAB01001252; torafugu NCX3, CAAB01001148; torafugu NCX4a, CAAB01000046; torafugu NCX4b, CAAB01002000; Tetraodon (Tetraodon nigroviridis) NCX1a, CAF93335; Tetraodon NCX1b, CAG00274; Tetraodon NCX2a, AF95011 and AB662956; Tetraodon NCX2b, CAG06357; Tetraodon NCX3, CAG13245; Tetraodon NCX4a, CAG01582; Tetraodon NCX4b, CAG05743; tilapia (Oreochromis mossambicus) NCX1, AAP37041; and mefugu NCX2a, AB663107.
Vecto Nti Alignment Software With Clustalw Algorithm, supplied by InforMax Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/clustalw+software/us08034333-55-38-40?v=InforMax+Inc
Average 90 stars, based on 1 article reviews
vecto nti alignment software with clustalw algorithm - by Bioz Stars, 2026-07
90/100 stars
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clustalw 2.0.12 software  (Federation of European Neuroscience Societies)
90
Federation of European Neuroscience Societies clustalw 2.0.12 software
Phylogenetic analysis of the Na+/Ca2+ exchanger (NCX) family. The tree was generated using the neighbor-joining method with <t>ClustalW</t> (48) and MEGA4 (47). The numbers show bootstrap values (1,000 replications). The scale bar represents a genetic distance of 0.05 amino acid substitutions per site. The mefugu (Takifugu obscurus) NCX2a is indicated by a black circle. The GenBank accession nos. of the amino acid sequences used are as follows: human NCX1, P32418; human NCX2, Q9UPR5; human NCX3, NP_150287; mouse NCX1, P70414; mouse NCX2, NP_683748; mouse NCX3, NP_536688; zebrafish NCX1a, NM_001037102; zebrafish NCX1b, NM_001039144; zebrafish NCX2a, NM_001123296; zebrafish NCX2b, NM_001123284; zebrafish NCX3, NM_001123256; zebrafish NCX4a, NM_001089419; zebrafish NCX4b, NM_001123240; torafugu (Takifugu rubripes) NCX1a, CAAB01007576; torafugu NCX1b, CAAB01000103; torafugu NCX2a, CAAB01002497; torafugu NCX2b, CAAB01001252; torafugu NCX3, CAAB01001148; torafugu NCX4a, CAAB01000046; torafugu NCX4b, CAAB01002000; Tetraodon (Tetraodon nigroviridis) NCX1a, CAF93335; Tetraodon NCX1b, CAG00274; Tetraodon NCX2a, AF95011 and AB662956; Tetraodon NCX2b, CAG06357; Tetraodon NCX3, CAG13245; Tetraodon NCX4a, CAG01582; Tetraodon NCX4b, CAG05743; tilapia (Oreochromis mossambicus) NCX1, AAP37041; and mefugu NCX2a, AB663107.
Clustalw 2.0.12 Software, supplied by Federation of European Neuroscience Societies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/clustalw+software/pm20979346-56-28-7?v=Federation+of+European+Neuroscience+Societies
Average 90 stars, based on 1 article reviews
clustalw 2.0.12 software - by Bioz Stars, 2026-07
90/100 stars
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clustalw algorithm implemented clcbio free workbench 4.0 software  (CLC Bio)
90
CLC Bio clustalw algorithm implemented clcbio free workbench 4.0 software
Phylogenetic analysis of the Na+/Ca2+ exchanger (NCX) family. The tree was generated using the neighbor-joining method with <t>ClustalW</t> (48) and MEGA4 (47). The numbers show bootstrap values (1,000 replications). The scale bar represents a genetic distance of 0.05 amino acid substitutions per site. The mefugu (Takifugu obscurus) NCX2a is indicated by a black circle. The GenBank accession nos. of the amino acid sequences used are as follows: human NCX1, P32418; human NCX2, Q9UPR5; human NCX3, NP_150287; mouse NCX1, P70414; mouse NCX2, NP_683748; mouse NCX3, NP_536688; zebrafish NCX1a, NM_001037102; zebrafish NCX1b, NM_001039144; zebrafish NCX2a, NM_001123296; zebrafish NCX2b, NM_001123284; zebrafish NCX3, NM_001123256; zebrafish NCX4a, NM_001089419; zebrafish NCX4b, NM_001123240; torafugu (Takifugu rubripes) NCX1a, CAAB01007576; torafugu NCX1b, CAAB01000103; torafugu NCX2a, CAAB01002497; torafugu NCX2b, CAAB01001252; torafugu NCX3, CAAB01001148; torafugu NCX4a, CAAB01000046; torafugu NCX4b, CAAB01002000; Tetraodon (Tetraodon nigroviridis) NCX1a, CAF93335; Tetraodon NCX1b, CAG00274; Tetraodon NCX2a, AF95011 and AB662956; Tetraodon NCX2b, CAG06357; Tetraodon NCX3, CAG13245; Tetraodon NCX4a, CAG01582; Tetraodon NCX4b, CAG05743; tilapia (Oreochromis mossambicus) NCX1, AAP37041; and mefugu NCX2a, AB663107.
Clustalw Algorithm Implemented Clcbio Free Workbench 4.0 Software, supplied by CLC Bio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/clustalw+software/pmc02630297-192-8-11?v=CLC+Bio
Average 90 stars, based on 1 article reviews
clustalw algorithm implemented clcbio free workbench 4.0 software - by Bioz Stars, 2026-07
90/100 stars
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Image Search Results


Variations in MMTV pol gene were observed after 12 wk lamivudine/zidovudine therapy in the NOD.c3c4 mouse. Alignment of amino acid sequence 136-198 of MMTV Pol P03365.2 using ClustalW alignment (MacVector 11.1 software) showing the amino acid variations W150R, R176G, Y183H, M188V and L192P in five clones derived from two mice treated with lamivudine/zidovudine that were not observed in control mice on placebo. Variants G160S and D181N were observed in mice receiving placebo and antiretroviral therapy. With permission from Sharon et al[8].

Journal: World Journal of Gastroenterology

Article Title: Combination antiretroviral studies for patients with primary biliary cirrhosis

doi: 10.3748/wjg.v22.i1.349

Figure Lengend Snippet: Variations in MMTV pol gene were observed after 12 wk lamivudine/zidovudine therapy in the NOD.c3c4 mouse. Alignment of amino acid sequence 136-198 of MMTV Pol P03365.2 using ClustalW alignment (MacVector 11.1 software) showing the amino acid variations W150R, R176G, Y183H, M188V and L192P in five clones derived from two mice treated with lamivudine/zidovudine that were not observed in control mice on placebo. Variants G160S and D181N were observed in mice receiving placebo and antiretroviral therapy. With permission from Sharon et al[8].

Article Snippet: Alignment of amino acid sequence 136-198 of MMTV Pol {"type":"entrez-protein","attrs":{"text":"P03365.2","term_id":"130646","term_text":"P03365.2"}} P03365.2 using ClustalW alignment (MacVector 11.1 software) showing the amino acid variations W150R, R176G, Y183H, M188V and L192P in five clones derived from two mice treated with lamivudine/zidovudine that were not observed in control mice on placebo.

Techniques: Sequencing, Software, Clone Assay, Derivative Assay

Sequence characteristics of MTH3-related proteins. A, phylogenic tree of human Nudix family proteins. Structural alignment and the construction of a phylogenic tree were performed using the ClustalW program. NUDT1, NUDT15, and NUDT18 (characterized by their structural features) correspond to MTH1, MTH2, and MTH3, respectively, the names of which were assigned on the basis of their similar biochemical activities. B, comparison of the structures of the MutT family proteins. The numbers correspond to the positions of the amino acid residues from the N termini. The positions of the conserved MutT box are shown by shaded boxes. The relative numbers of amino acid residues identical to those of MTH3 are shown to the right of each sequence.

Journal: The Journal of Biological Chemistry

Article Title: Human MTH3 (NUDT18) Protein Hydrolyzes Oxidized Forms of Guanosine and Deoxyguanosine Diphosphates

doi: 10.1074/jbc.M112.363010

Figure Lengend Snippet: Sequence characteristics of MTH3-related proteins. A, phylogenic tree of human Nudix family proteins. Structural alignment and the construction of a phylogenic tree were performed using the ClustalW program. NUDT1, NUDT15, and NUDT18 (characterized by their structural features) correspond to MTH1, MTH2, and MTH3, respectively, the names of which were assigned on the basis of their similar biochemical activities. B, comparison of the structures of the MutT family proteins. The numbers correspond to the positions of the amino acid residues from the N termini. The positions of the conserved MutT box are shown by shaded boxes. The relative numbers of amino acid residues identical to those of MTH3 are shown to the right of each sequence.

Article Snippet: The primary structures of human Nudix proteins were analyzed using the ClustalW software program, which is equipped with a sequence analysis application, MacVector (MacVector, Inc.).

Techniques: Sequencing, Comparison

Phylogenetic analysis of the Na+/Ca2+ exchanger (NCX) family. The tree was generated using the neighbor-joining method with ClustalW (48) and MEGA4 (47). The numbers show bootstrap values (1,000 replications). The scale bar represents a genetic distance of 0.05 amino acid substitutions per site. The mefugu (Takifugu obscurus) NCX2a is indicated by a black circle. The GenBank accession nos. of the amino acid sequences used are as follows: human NCX1, P32418; human NCX2, Q9UPR5; human NCX3, NP_150287; mouse NCX1, P70414; mouse NCX2, NP_683748; mouse NCX3, NP_536688; zebrafish NCX1a, NM_001037102; zebrafish NCX1b, NM_001039144; zebrafish NCX2a, NM_001123296; zebrafish NCX2b, NM_001123284; zebrafish NCX3, NM_001123256; zebrafish NCX4a, NM_001089419; zebrafish NCX4b, NM_001123240; torafugu (Takifugu rubripes) NCX1a, CAAB01007576; torafugu NCX1b, CAAB01000103; torafugu NCX2a, CAAB01002497; torafugu NCX2b, CAAB01001252; torafugu NCX3, CAAB01001148; torafugu NCX4a, CAAB01000046; torafugu NCX4b, CAAB01002000; Tetraodon (Tetraodon nigroviridis) NCX1a, CAF93335; Tetraodon NCX1b, CAG00274; Tetraodon NCX2a, AF95011 and AB662956; Tetraodon NCX2b, CAG06357; Tetraodon NCX3, CAG13245; Tetraodon NCX4a, CAG01582; Tetraodon NCX4b, CAG05743; tilapia (Oreochromis mossambicus) NCX1, AAP37041; and mefugu NCX2a, AB663107.

Journal: American Journal of Physiology - Regulatory, Integrative and Comparative Physiology

Article Title: Identification and apical membrane localization of an electrogenic Na + /Ca 2+ exchanger NCX2a likely to be involved in renal Ca 2+ excretion by seawater fish

doi: 10.1152/ajpregu.00165.2011

Figure Lengend Snippet: Phylogenetic analysis of the Na+/Ca2+ exchanger (NCX) family. The tree was generated using the neighbor-joining method with ClustalW (48) and MEGA4 (47). The numbers show bootstrap values (1,000 replications). The scale bar represents a genetic distance of 0.05 amino acid substitutions per site. The mefugu (Takifugu obscurus) NCX2a is indicated by a black circle. The GenBank accession nos. of the amino acid sequences used are as follows: human NCX1, P32418; human NCX2, Q9UPR5; human NCX3, NP_150287; mouse NCX1, P70414; mouse NCX2, NP_683748; mouse NCX3, NP_536688; zebrafish NCX1a, NM_001037102; zebrafish NCX1b, NM_001039144; zebrafish NCX2a, NM_001123296; zebrafish NCX2b, NM_001123284; zebrafish NCX3, NM_001123256; zebrafish NCX4a, NM_001089419; zebrafish NCX4b, NM_001123240; torafugu (Takifugu rubripes) NCX1a, CAAB01007576; torafugu NCX1b, CAAB01000103; torafugu NCX2a, CAAB01002497; torafugu NCX2b, CAAB01001252; torafugu NCX3, CAAB01001148; torafugu NCX4a, CAAB01000046; torafugu NCX4b, CAAB01002000; Tetraodon (Tetraodon nigroviridis) NCX1a, CAF93335; Tetraodon NCX1b, CAG00274; Tetraodon NCX2a, AF95011 and AB662956; Tetraodon NCX2b, CAG06357; Tetraodon NCX3, CAG13245; Tetraodon NCX4a, CAG01582; Tetraodon NCX4b, CAG05743; tilapia (Oreochromis mossambicus) NCX1, AAP37041; and mefugu NCX2a, AB663107.

Article Snippet: The amino acid sequences of mefugu NCX2a (mfNCX2a) and other species were initially aligned using ClustalW software and then imported into GENETYX version 8.2.0 (Genetyx, Tokyo, Japan) for manual editing.

Techniques: Generated