bamm Search Results


bamm  (RStudio)
90
RStudio bamm
Divergence time estimation <t>and</t> <t>speciation–extinction</t> rate analysis based on the root age of Asteraceae as 49–42 Ma [ , , ] and combined sequence. ( A ) The speciation–extinction rates analysis performed by <t>BAMM</t> and BAMMtools . ( B ) The divergence time estimation performed by BEAST 1.10.4 , and geological time scale visualized with the strap package . The values beside nodes indicate the estimated median time of differentiation, and error bars indicate 95% highest posterior density (HPD) of differentiation. The black squares on nodes indicate calibration time. The circles with black, blue and red respectively indicate posterior probability more than 0.90, 0.60–0.90, and less than 0.60.
Bamm, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/bamm/product/RStudio
Average 90 stars, based on 1 article reviews
bamm - by Bioz Stars, 2026-04
90/100 stars
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bamm v1.7.3  (Ecogenomics Inc)
90
Ecogenomics Inc bamm v1.7.3
Divergence time estimation <t>and</t> <t>speciation–extinction</t> rate analysis based on the root age of Asteraceae as 49–42 Ma [ , , ] and combined sequence. ( A ) The speciation–extinction rates analysis performed by <t>BAMM</t> and BAMMtools . ( B ) The divergence time estimation performed by BEAST 1.10.4 , and geological time scale visualized with the strap package . The values beside nodes indicate the estimated median time of differentiation, and error bars indicate 95% highest posterior density (HPD) of differentiation. The black squares on nodes indicate calibration time. The circles with black, blue and red respectively indicate posterior probability more than 0.90, 0.60–0.90, and less than 0.60.
Bamm V1.7.3, supplied by Ecogenomics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/bamm v1.7.3/product/Ecogenomics Inc
Average 90 stars, based on 1 article reviews
bamm v1.7.3 - by Bioz Stars, 2026-04
90/100 stars
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bamm  (Ecogenomics Inc)
90
Ecogenomics Inc bamm
Divergence time estimation <t>and</t> <t>speciation–extinction</t> rate analysis based on the root age of Asteraceae as 49–42 Ma [ , , ] and combined sequence. ( A ) The speciation–extinction rates analysis performed by <t>BAMM</t> and BAMMtools . ( B ) The divergence time estimation performed by BEAST 1.10.4 , and geological time scale visualized with the strap package . The values beside nodes indicate the estimated median time of differentiation, and error bars indicate 95% highest posterior density (HPD) of differentiation. The black squares on nodes indicate calibration time. The circles with black, blue and red respectively indicate posterior probability more than 0.90, 0.60–0.90, and less than 0.60.
Bamm, supplied by Ecogenomics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/bamm/product/Ecogenomics Inc
Average 90 stars, based on 1 article reviews
bamm - by Bioz Stars, 2026-04
90/100 stars
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bamm (v.1.7.3  (Ecogenomics Inc)
90
Ecogenomics Inc bamm (v.1.7.3
Divergence time estimation <t>and</t> <t>speciation–extinction</t> rate analysis based on the root age of Asteraceae as 49–42 Ma [ , , ] and combined sequence. ( A ) The speciation–extinction rates analysis performed by <t>BAMM</t> and BAMMtools . ( B ) The divergence time estimation performed by BEAST 1.10.4 , and geological time scale visualized with the strap package . The values beside nodes indicate the estimated median time of differentiation, and error bars indicate 95% highest posterior density (HPD) of differentiation. The black squares on nodes indicate calibration time. The circles with black, blue and red respectively indicate posterior probability more than 0.90, 0.60–0.90, and less than 0.60.
Bamm (V.1.7.3, supplied by Ecogenomics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/bamm (v.1.7.3/product/Ecogenomics Inc
Average 90 stars, based on 1 article reviews
bamm (v.1.7.3 - by Bioz Stars, 2026-04
90/100 stars
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bamm tool  (Ecogenomics Inc)
90
Ecogenomics Inc bamm tool
Divergence time estimation <t>and</t> <t>speciation–extinction</t> rate analysis based on the root age of Asteraceae as 49–42 Ma [ , , ] and combined sequence. ( A ) The speciation–extinction rates analysis performed by <t>BAMM</t> and BAMMtools . ( B ) The divergence time estimation performed by BEAST 1.10.4 , and geological time scale visualized with the strap package . The values beside nodes indicate the estimated median time of differentiation, and error bars indicate 95% highest posterior density (HPD) of differentiation. The black squares on nodes indicate calibration time. The circles with black, blue and red respectively indicate posterior probability more than 0.90, 0.60–0.90, and less than 0.60.
Bamm Tool, supplied by Ecogenomics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/bamm tool/product/Ecogenomics Inc
Average 90 stars, based on 1 article reviews
bamm tool - by Bioz Stars, 2026-04
90/100 stars
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bamm “parse  (Ecogenomics Inc)
90
Ecogenomics Inc bamm “parse
Divergence time estimation <t>and</t> <t>speciation–extinction</t> rate analysis based on the root age of Asteraceae as 49–42 Ma [ , , ] and combined sequence. ( A ) The speciation–extinction rates analysis performed by <t>BAMM</t> and BAMMtools . ( B ) The divergence time estimation performed by BEAST 1.10.4 , and geological time scale visualized with the strap package . The values beside nodes indicate the estimated median time of differentiation, and error bars indicate 95% highest posterior density (HPD) of differentiation. The black squares on nodes indicate calibration time. The circles with black, blue and red respectively indicate posterior probability more than 0.90, 0.60–0.90, and less than 0.60.
Bamm “Parse, supplied by Ecogenomics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/bamm “parse/product/Ecogenomics Inc
Average 90 stars, based on 1 article reviews
bamm “parse - by Bioz Stars, 2026-04
90/100 stars
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bamm 1.7.3  (Ecogenomics Inc)
90
Ecogenomics Inc bamm 1.7.3
Divergence time estimation <t>and</t> <t>speciation–extinction</t> rate analysis based on the root age of Asteraceae as 49–42 Ma [ , , ] and combined sequence. ( A ) The speciation–extinction rates analysis performed by <t>BAMM</t> and BAMMtools . ( B ) The divergence time estimation performed by BEAST 1.10.4 , and geological time scale visualized with the strap package . The values beside nodes indicate the estimated median time of differentiation, and error bars indicate 95% highest posterior density (HPD) of differentiation. The black squares on nodes indicate calibration time. The circles with black, blue and red respectively indicate posterior probability more than 0.90, 0.60–0.90, and less than 0.60.
Bamm 1.7.3, supplied by Ecogenomics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/bamm 1.7.3/product/Ecogenomics Inc
Average 90 stars, based on 1 article reviews
bamm 1.7.3 - by Bioz Stars, 2026-04
90/100 stars
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bamm (v.1.7.3, --percentage_id 0.99 --percentage_aln 0.9)  (Ecogenomics Inc)
90
Ecogenomics Inc bamm (v.1.7.3, --percentage_id 0.99 --percentage_aln 0.9)
Divergence time estimation <t>and</t> <t>speciation–extinction</t> rate analysis based on the root age of Asteraceae as 49–42 Ma [ , , ] and combined sequence. ( A ) The speciation–extinction rates analysis performed by <t>BAMM</t> and BAMMtools . ( B ) The divergence time estimation performed by BEAST 1.10.4 , and geological time scale visualized with the strap package . The values beside nodes indicate the estimated median time of differentiation, and error bars indicate 95% highest posterior density (HPD) of differentiation. The black squares on nodes indicate calibration time. The circles with black, blue and red respectively indicate posterior probability more than 0.90, 0.60–0.90, and less than 0.60.
Bamm (V.1.7.3, Percentage Id 0.99 Percentage Aln 0.9), supplied by Ecogenomics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/bamm (v.1.7.3, --percentage_id 0.99 --percentage_aln 0.9)/product/Ecogenomics Inc
Average 90 stars, based on 1 article reviews
bamm (v.1.7.3, --percentage_id 0.99 --percentage_aln 0.9) - by Bioz Stars, 2026-04
90/100 stars
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partial pelviglossectomy/bamm flap  (TransOral Pharmaceuticals)
90
TransOral Pharmaceuticals partial pelviglossectomy/bamm flap
Study design and independent variables considered for data stratification and findings. Legend to <xref ref-type= Table 2 : ACE-27 = Adult Comorbidity Evaluation 27 score; ADM = acellular dermal matrix; BAMM = buccinator myomucosal flap; BOT = base of tongue; CRT = chemoradiotherapy; CT = chemotherapy; DCIA = deep circumflex iliac artery flap; FFF = free fibula flap; FOM = floor of the mouth; G8 = Geriatric 8 screening tool; HADS = Hospital Anxiety and Depression Scale; HNC = head and neck cancer; KFI = Kaplan–Feinstein index; MRND = modified radical neck dissection; ND = neck dissection; NOS = not otherwise specified; OC = oral cavity; OCC = oral cavity cancer; OP = oropharynx; OOP = oral cavity and oropharynx; OOPC = oral/oropharyngeal cancer; ORFFF = osteofasciocutaneous radial forearm free flap; OSCC = oral squamous cell carcinoma; PMMC = pectoralis major myocutaneous flap; RFFF = radial forearm free flap; RT = radiotherapy; SCAIF = supraclavicular artery island flap; SCC = squamous cell carcinoma; SND = selective neck dissection; STSG = split thickness skin graft." width="250" height="auto" />
Partial Pelviglossectomy/Bamm Flap, supplied by TransOral Pharmaceuticals, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/partial pelviglossectomy/bamm flap/product/TransOral Pharmaceuticals
Average 90 stars, based on 1 article reviews
partial pelviglossectomy/bamm flap - by Bioz Stars, 2026-04
90/100 stars
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bayesian analysis macroevolutionary mixtures (bamm) package  (RStudio)
90
RStudio bayesian analysis macroevolutionary mixtures (bamm) package
Study design and independent variables considered for data stratification and findings. Legend to <xref ref-type= Table 2 : ACE-27 = Adult Comorbidity Evaluation 27 score; ADM = acellular dermal matrix; BAMM = buccinator myomucosal flap; BOT = base of tongue; CRT = chemoradiotherapy; CT = chemotherapy; DCIA = deep circumflex iliac artery flap; FFF = free fibula flap; FOM = floor of the mouth; G8 = Geriatric 8 screening tool; HADS = Hospital Anxiety and Depression Scale; HNC = head and neck cancer; KFI = Kaplan–Feinstein index; MRND = modified radical neck dissection; ND = neck dissection; NOS = not otherwise specified; OC = oral cavity; OCC = oral cavity cancer; OP = oropharynx; OOP = oral cavity and oropharynx; OOPC = oral/oropharyngeal cancer; ORFFF = osteofasciocutaneous radial forearm free flap; OSCC = oral squamous cell carcinoma; PMMC = pectoralis major myocutaneous flap; RFFF = radial forearm free flap; RT = radiotherapy; SCAIF = supraclavicular artery island flap; SCC = squamous cell carcinoma; SND = selective neck dissection; STSG = split thickness skin graft." width="250" height="auto" />
Bayesian Analysis Macroevolutionary Mixtures (Bamm) Package, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/bayesian analysis macroevolutionary mixtures (bamm) package/product/RStudio
Average 90 stars, based on 1 article reviews
bayesian analysis macroevolutionary mixtures (bamm) package - by Bioz Stars, 2026-04
90/100 stars
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bamm (version: 1.7.3  (Ecogenomics Inc)
90
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bamm “filter  (Ecogenomics Inc)
90
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Image Search Results


Divergence time estimation and speciation–extinction rate analysis based on the root age of Asteraceae as 49–42 Ma [ , , ] and combined sequence. ( A ) The speciation–extinction rates analysis performed by BAMM and BAMMtools . ( B ) The divergence time estimation performed by BEAST 1.10.4 , and geological time scale visualized with the strap package . The values beside nodes indicate the estimated median time of differentiation, and error bars indicate 95% highest posterior density (HPD) of differentiation. The black squares on nodes indicate calibration time. The circles with black, blue and red respectively indicate posterior probability more than 0.90, 0.60–0.90, and less than 0.60.

Journal: Plants

Article Title: Phylogenetic Reconstruction and Divergence Time Estimation of Blumea DC. (Asteraceae: Inuleae) in China Based on nrDNA ITS and cpDNA trnL-F Sequences

doi: 10.3390/plants8070210

Figure Lengend Snippet: Divergence time estimation and speciation–extinction rate analysis based on the root age of Asteraceae as 49–42 Ma [ , , ] and combined sequence. ( A ) The speciation–extinction rates analysis performed by BAMM and BAMMtools . ( B ) The divergence time estimation performed by BEAST 1.10.4 , and geological time scale visualized with the strap package . The values beside nodes indicate the estimated median time of differentiation, and error bars indicate 95% highest posterior density (HPD) of differentiation. The black squares on nodes indicate calibration time. The circles with black, blue and red respectively indicate posterior probability more than 0.90, 0.60–0.90, and less than 0.60.

Article Snippet: To investigate the speciation rates of Blumea DC along with time, BAMM ( http://bamm-project.org/ ) [ ] and BAMMtools ( https://cran.rstudio.com/web/packages/BAMMtools/index.html ) [ ] were used to compare the speciation rates with the two hypotheses of the root age of Asteraceae.

Techniques: Sequencing

Divergence time estimation and speciation–extinction rates analysis based on the root age of Asteraceae as 76–66 Ma and the combined sequence. ( A ) The speciation–extinction rates analysis performed by BAMM and BAMMtools . ( B ) The divergence time estimation performed by BEAST 1.10.4 , and geological time scale visualized with the strap package . The values beside nodes indicate the estimated median time of differentiation, and error bars indicate 95% HPD of differentiation. The black squares on nodes indicate calibration time. The circles with black, blue and red respectively indicate posterior probability more than 0.90, 0.60-0.90, and less than 0.60.

Journal: Plants

Article Title: Phylogenetic Reconstruction and Divergence Time Estimation of Blumea DC. (Asteraceae: Inuleae) in China Based on nrDNA ITS and cpDNA trnL-F Sequences

doi: 10.3390/plants8070210

Figure Lengend Snippet: Divergence time estimation and speciation–extinction rates analysis based on the root age of Asteraceae as 76–66 Ma and the combined sequence. ( A ) The speciation–extinction rates analysis performed by BAMM and BAMMtools . ( B ) The divergence time estimation performed by BEAST 1.10.4 , and geological time scale visualized with the strap package . The values beside nodes indicate the estimated median time of differentiation, and error bars indicate 95% HPD of differentiation. The black squares on nodes indicate calibration time. The circles with black, blue and red respectively indicate posterior probability more than 0.90, 0.60-0.90, and less than 0.60.

Article Snippet: To investigate the speciation rates of Blumea DC along with time, BAMM ( http://bamm-project.org/ ) [ ] and BAMMtools ( https://cran.rstudio.com/web/packages/BAMMtools/index.html ) [ ] were used to compare the speciation rates with the two hypotheses of the root age of Asteraceae.

Techniques: Sequencing

Study design and independent variables considered for data stratification and findings. Legend to <xref ref-type= Table 2 : ACE-27 = Adult Comorbidity Evaluation 27 score; ADM = acellular dermal matrix; BAMM = buccinator myomucosal flap; BOT = base of tongue; CRT = chemoradiotherapy; CT = chemotherapy; DCIA = deep circumflex iliac artery flap; FFF = free fibula flap; FOM = floor of the mouth; G8 = Geriatric 8 screening tool; HADS = Hospital Anxiety and Depression Scale; HNC = head and neck cancer; KFI = Kaplan–Feinstein index; MRND = modified radical neck dissection; ND = neck dissection; NOS = not otherwise specified; OC = oral cavity; OCC = oral cavity cancer; OP = oropharynx; OOP = oral cavity and oropharynx; OOPC = oral/oropharyngeal cancer; ORFFF = osteofasciocutaneous radial forearm free flap; OSCC = oral squamous cell carcinoma; PMMC = pectoralis major myocutaneous flap; RFFF = radial forearm free flap; RT = radiotherapy; SCAIF = supraclavicular artery island flap; SCC = squamous cell carcinoma; SND = selective neck dissection; STSG = split thickness skin graft." width="100%" height="100%">

Journal: Cancers

Article Title: Health-Related Quality of Life in Oral Cancer Patients: Scoping Review and Critical Appraisal of Investigated Determinants

doi: 10.3390/cancers13174398

Figure Lengend Snippet: Study design and independent variables considered for data stratification and findings. Legend to Table 2 : ACE-27 = Adult Comorbidity Evaluation 27 score; ADM = acellular dermal matrix; BAMM = buccinator myomucosal flap; BOT = base of tongue; CRT = chemoradiotherapy; CT = chemotherapy; DCIA = deep circumflex iliac artery flap; FFF = free fibula flap; FOM = floor of the mouth; G8 = Geriatric 8 screening tool; HADS = Hospital Anxiety and Depression Scale; HNC = head and neck cancer; KFI = Kaplan–Feinstein index; MRND = modified radical neck dissection; ND = neck dissection; NOS = not otherwise specified; OC = oral cavity; OCC = oral cavity cancer; OP = oropharynx; OOP = oral cavity and oropharynx; OOPC = oral/oropharyngeal cancer; ORFFF = osteofasciocutaneous radial forearm free flap; OSCC = oral squamous cell carcinoma; PMMC = pectoralis major myocutaneous flap; RFFF = radial forearm free flap; RT = radiotherapy; SCAIF = supraclavicular artery island flap; SCC = squamous cell carcinoma; SND = selective neck dissection; STSG = split thickness skin graft.

Article Snippet: Ferri, 2020 [ ] , Multicenter retrospective cohort study , Italy , 70 , OSCC (T1-2, N0) involving the tongue and FOM undergoing transoral partial pelviglossectomy/BAMM flap or pull-through partial pelviglossectomy/free flap , Other: treatment protocol (transoral partial pelviglossectomy followed by BAMM flap vs. pull-through partial pelviglossectomy followed by free flap) , Significantly better results in transoral/BAMM flap group for average H&N35 questionnaire. The authors did not provide item-specific data, except for swallowing, which had significantly better result in the transoral/BAMM group.

Techniques: Field Flow Fractionation, Modification, Dissection, Functional Assay, Selection