automapper Search Results


automapper 5.0.1  (ChemAxon LLC)
90
ChemAxon LLC automapper 5.0.1
Atom mapping predictions for the enolase reaction. All six compared algorithms returned an accurate atom mapping but included different types of additional information. CLCA and MWED identify equivalent atoms in the reactants ( blue ). DREAM and <t>AutoMapper</t> map hydrogen atoms ( yellow ). RDT, CLCA, ICMAP and MWED all identify reaction centres ( green ). Unlike the other three algorithms, MWED does not identify reaction centres by adding information to the bonds that break and form. Instead, it assigns different colours to the molecular substructures (moieties) that break apart or bind together. The atom mapped reactions are visualised with MarvinView (ChemAxon, Budapest, Hungary), which accepts the RXN and SMILES formats as input
Automapper 5.0.1, supplied by ChemAxon LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/automapper 5.0.1/product/ChemAxon LLC
Average 90 stars, based on 1 article reviews
automapper 5.0.1 - by Bioz Stars, 2026-04
90/100 stars
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automapper  (ChemAxon LLC)
90
ChemAxon LLC automapper
Atom mapping predictions for the enolase reaction. All six compared algorithms returned an accurate atom mapping but included different types of additional information. CLCA and MWED identify equivalent atoms in the reactants ( blue ). DREAM and <t>AutoMapper</t> map hydrogen atoms ( yellow ). RDT, CLCA, ICMAP and MWED all identify reaction centres ( green ). Unlike the other three algorithms, MWED does not identify reaction centres by adding information to the bonds that break and form. Instead, it assigns different colours to the molecular substructures (moieties) that break apart or bind together. The atom mapped reactions are visualised with MarvinView (ChemAxon, Budapest, Hungary), which accepts the RXN and SMILES formats as input
Automapper, supplied by ChemAxon LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/automapper/product/ChemAxon LLC
Average 90 stars, based on 1 article reviews
automapper - by Bioz Stars, 2026-04
90/100 stars
  Buy from Supplier
automapper user's guide  (ChemAxon LLC)
90
ChemAxon LLC automapper user's guide
Atom mapping predictions for the enolase reaction. All six compared algorithms returned an accurate atom mapping but included different types of additional information. CLCA and MWED identify equivalent atoms in the reactants ( blue ). DREAM and <t>AutoMapper</t> map hydrogen atoms ( yellow ). RDT, CLCA, ICMAP and MWED all identify reaction centres ( green ). Unlike the other three algorithms, MWED does not identify reaction centres by adding information to the bonds that break and form. Instead, it assigns different colours to the molecular substructures (moieties) that break apart or bind together. The atom mapped reactions are visualised with MarvinView (ChemAxon, Budapest, Hungary), which accepts the RXN and SMILES formats as input
Automapper User's Guide, supplied by ChemAxon LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/automapper user's guide/product/ChemAxon LLC
Average 90 stars, based on 1 article reviews
automapper user's guide - by Bioz Stars, 2026-04
90/100 stars
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automapper [20]  (ChemAxon LLC)
90
ChemAxon LLC automapper [20]
Atom mapping predictions for the enolase reaction. All six compared algorithms returned an accurate atom mapping but included different types of additional information. CLCA and MWED identify equivalent atoms in the reactants ( blue ). DREAM and <t>AutoMapper</t> map hydrogen atoms ( yellow ). RDT, CLCA, ICMAP and MWED all identify reaction centres ( green ). Unlike the other three algorithms, MWED does not identify reaction centres by adding information to the bonds that break and form. Instead, it assigns different colours to the molecular substructures (moieties) that break apart or bind together. The atom mapped reactions are visualised with MarvinView (ChemAxon, Budapest, Hungary), which accepts the RXN and SMILES formats as input
Automapper [20], supplied by ChemAxon LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/automapper [20]/product/ChemAxon LLC
Average 90 stars, based on 1 article reviews
automapper [20] - by Bioz Stars, 2026-04
90/100 stars
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automapper pipeline  (Applied Bioinformatics)
90
Applied Bioinformatics automapper pipeline
Atom mapping predictions for the enolase reaction. All six compared algorithms returned an accurate atom mapping but included different types of additional information. CLCA and MWED identify equivalent atoms in the reactants ( blue ). DREAM and <t>AutoMapper</t> map hydrogen atoms ( yellow ). RDT, CLCA, ICMAP and MWED all identify reaction centres ( green ). Unlike the other three algorithms, MWED does not identify reaction centres by adding information to the bonds that break and form. Instead, it assigns different colours to the molecular substructures (moieties) that break apart or bind together. The atom mapped reactions are visualised with MarvinView (ChemAxon, Budapest, Hungary), which accepts the RXN and SMILES formats as input
Automapper Pipeline, supplied by Applied Bioinformatics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/automapper pipeline/product/Applied Bioinformatics
Average 90 stars, based on 1 article reviews
automapper pipeline - by Bioz Stars, 2026-04
90/100 stars
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automapper aam procedure  (ChemAxon LLC)
90
ChemAxon LLC automapper aam procedure
Atom mapping predictions for the enolase reaction. All six compared algorithms returned an accurate atom mapping but included different types of additional information. CLCA and MWED identify equivalent atoms in the reactants ( blue ). DREAM and <t>AutoMapper</t> map hydrogen atoms ( yellow ). RDT, CLCA, ICMAP and MWED all identify reaction centres ( green ). Unlike the other three algorithms, MWED does not identify reaction centres by adding information to the bonds that break and form. Instead, it assigns different colours to the molecular substructures (moieties) that break apart or bind together. The atom mapped reactions are visualised with MarvinView (ChemAxon, Budapest, Hungary), which accepts the RXN and SMILES formats as input
Automapper Aam Procedure, supplied by ChemAxon LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/automapper aam procedure/product/ChemAxon LLC
Average 90 stars, based on 1 article reviews
automapper aam procedure - by Bioz Stars, 2026-04
90/100 stars
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indigo automapper  (KNIME GmbH)
90
KNIME GmbH indigo automapper
Atom mapping predictions for the enolase reaction. All six compared algorithms returned an accurate atom mapping but included different types of additional information. CLCA and MWED identify equivalent atoms in the reactants ( blue ). DREAM and <t>AutoMapper</t> map hydrogen atoms ( yellow ). RDT, CLCA, ICMAP and MWED all identify reaction centres ( green ). Unlike the other three algorithms, MWED does not identify reaction centres by adding information to the bonds that break and form. Instead, it assigns different colours to the molecular substructures (moieties) that break apart or bind together. The atom mapped reactions are visualised with MarvinView (ChemAxon, Budapest, Hungary), which accepts the RXN and SMILES formats as input
Indigo Automapper, supplied by KNIME GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/indigo automapper/product/KNIME GmbH
Average 90 stars, based on 1 article reviews
indigo automapper - by Bioz Stars, 2026-04
90/100 stars
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automapper  (Accelrys)
90
Accelrys automapper
Atom mapping predictions for the enolase reaction. All six compared algorithms returned an accurate atom mapping but included different types of additional information. CLCA and MWED identify equivalent atoms in the reactants ( blue ). DREAM and <t>AutoMapper</t> map hydrogen atoms ( yellow ). RDT, CLCA, ICMAP and MWED all identify reaction centres ( green ). Unlike the other three algorithms, MWED does not identify reaction centres by adding information to the bonds that break and form. Instead, it assigns different colours to the molecular substructures (moieties) that break apart or bind together. The atom mapped reactions are visualised with MarvinView (ChemAxon, Budapest, Hungary), which accepts the RXN and SMILES formats as input
Automapper, supplied by Accelrys, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/automapper/product/Accelrys
Average 90 stars, based on 1 article reviews
automapper - by Bioz Stars, 2026-04
90/100 stars
  Buy from Supplier
ec-based automapper  (Accelrys)
90
Accelrys ec-based automapper
Atom mapping predictions for the enolase reaction. All six compared algorithms returned an accurate atom mapping but included different types of additional information. CLCA and MWED identify equivalent atoms in the reactants ( blue ). DREAM and <t>AutoMapper</t> map hydrogen atoms ( yellow ). RDT, CLCA, ICMAP and MWED all identify reaction centres ( green ). Unlike the other three algorithms, MWED does not identify reaction centres by adding information to the bonds that break and form. Instead, it assigns different colours to the molecular substructures (moieties) that break apart or bind together. The atom mapped reactions are visualised with MarvinView (ChemAxon, Budapest, Hungary), which accepts the RXN and SMILES formats as input
Ec Based Automapper, supplied by Accelrys, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/ec-based automapper/product/Accelrys
Average 90 stars, based on 1 article reviews
ec-based automapper - by Bioz Stars, 2026-04
90/100 stars
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automapper/chemaxon jchem standardize  (ChemAxon LLC)
90
ChemAxon LLC automapper/chemaxon jchem standardize
Atom mapping predictions for the enolase reaction. All six compared algorithms returned an accurate atom mapping but included different types of additional information. CLCA and MWED identify equivalent atoms in the reactants ( blue ). DREAM and <t>AutoMapper</t> map hydrogen atoms ( yellow ). RDT, CLCA, ICMAP and MWED all identify reaction centres ( green ). Unlike the other three algorithms, MWED does not identify reaction centres by adding information to the bonds that break and form. Instead, it assigns different colours to the molecular substructures (moieties) that break apart or bind together. The atom mapped reactions are visualised with MarvinView (ChemAxon, Budapest, Hungary), which accepts the RXN and SMILES formats as input
Automapper/Chemaxon Jchem Standardize, supplied by ChemAxon LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/automapper/chemaxon jchem standardize/product/ChemAxon LLC
Average 90 stars, based on 1 article reviews
automapper/chemaxon jchem standardize - by Bioz Stars, 2026-04
90/100 stars
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Image Search Results


Atom mapping predictions for the enolase reaction. All six compared algorithms returned an accurate atom mapping but included different types of additional information. CLCA and MWED identify equivalent atoms in the reactants ( blue ). DREAM and AutoMapper map hydrogen atoms ( yellow ). RDT, CLCA, ICMAP and MWED all identify reaction centres ( green ). Unlike the other three algorithms, MWED does not identify reaction centres by adding information to the bonds that break and form. Instead, it assigns different colours to the molecular substructures (moieties) that break apart or bind together. The atom mapped reactions are visualised with MarvinView (ChemAxon, Budapest, Hungary), which accepts the RXN and SMILES formats as input

Journal: Journal of Cheminformatics

Article Title: Comparative evaluation of atom mapping algorithms for balanced metabolic reactions: application to Recon 3D

doi: 10.1186/s13321-017-0223-1

Figure Lengend Snippet: Atom mapping predictions for the enolase reaction. All six compared algorithms returned an accurate atom mapping but included different types of additional information. CLCA and MWED identify equivalent atoms in the reactants ( blue ). DREAM and AutoMapper map hydrogen atoms ( yellow ). RDT, CLCA, ICMAP and MWED all identify reaction centres ( green ). Unlike the other three algorithms, MWED does not identify reaction centres by adding information to the bonds that break and form. Instead, it assigns different colours to the molecular substructures (moieties) that break apart or bind together. The atom mapped reactions are visualised with MarvinView (ChemAxon, Budapest, Hungary), which accepts the RXN and SMILES formats as input

Article Snippet: Six academic and commercially available atom mapping algorithms were included in our evaluation Reaction Decoder Tool (RDT, [ ]), Determination of Reaction Mechanisms (DREAM, [ ]), AutoMapper 5.0.1 (AutoMapper, [ ], ChemAxon, Budapest, Hungary), Canonical Labeling for Clique Approximation (CLCA, [ ]), Minimum Weighted Edit-Distance (MWED, [ ]) within Pathway Tools, and InfoChem-Map (ICMAP, [ ], InfoChem, Munich, Germany).

Techniques:

Number of evaluated reactions per algorithm

Journal: Journal of Cheminformatics

Article Title: Comparative evaluation of atom mapping algorithms for balanced metabolic reactions: application to Recon 3D

doi: 10.1186/s13321-017-0223-1

Figure Lengend Snippet: Number of evaluated reactions per algorithm

Article Snippet: Six academic and commercially available atom mapping algorithms were included in our evaluation Reaction Decoder Tool (RDT, [ ]), Determination of Reaction Mechanisms (DREAM, [ ]), AutoMapper 5.0.1 (AutoMapper, [ ], ChemAxon, Budapest, Hungary), Canonical Labeling for Clique Approximation (CLCA, [ ]), Minimum Weighted Edit-Distance (MWED, [ ]) within Pathway Tools, and InfoChem-Map (ICMAP, [ ], InfoChem, Munich, Germany).

Techniques:

Comparison of technical features

Journal: Journal of Cheminformatics

Article Title: Comparative evaluation of atom mapping algorithms for balanced metabolic reactions: application to Recon 3D

doi: 10.1186/s13321-017-0223-1

Figure Lengend Snippet: Comparison of technical features

Article Snippet: Six academic and commercially available atom mapping algorithms were included in our evaluation Reaction Decoder Tool (RDT, [ ]), Determination of Reaction Mechanisms (DREAM, [ ]), AutoMapper 5.0.1 (AutoMapper, [ ], ChemAxon, Budapest, Hungary), Canonical Labeling for Clique Approximation (CLCA, [ ]), Minimum Weighted Edit-Distance (MWED, [ ]) within Pathway Tools, and InfoChem-Map (ICMAP, [ ], InfoChem, Munich, Germany).

Techniques: Comparison

Comparison of advanced features

Journal: Journal of Cheminformatics

Article Title: Comparative evaluation of atom mapping algorithms for balanced metabolic reactions: application to Recon 3D

doi: 10.1186/s13321-017-0223-1

Figure Lengend Snippet: Comparison of advanced features

Article Snippet: Six academic and commercially available atom mapping algorithms were included in our evaluation Reaction Decoder Tool (RDT, [ ]), Determination of Reaction Mechanisms (DREAM, [ ]), AutoMapper 5.0.1 (AutoMapper, [ ], ChemAxon, Budapest, Hungary), Canonical Labeling for Clique Approximation (CLCA, [ ]), Minimum Weighted Edit-Distance (MWED, [ ]) within Pathway Tools, and InfoChem-Map (ICMAP, [ ], InfoChem, Munich, Germany).

Techniques: Comparison