atac-seq Search Results


atac seq libraries  (Zymo Research)
95
Zymo Research atac seq libraries
Atac Seq Libraries, supplied by Zymo Research, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/atac seq libraries/product/Zymo Research
Average 95 stars, based on 1 article reviews
atac seq libraries - by Bioz Stars, 2026-04
95/100 stars
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tn5 part of the surecell atac seq library prep kit 17004620 bio rad  (Bio-Rad)
95
Bio-Rad tn5 part of the surecell atac seq library prep kit 17004620 bio rad
Tn5 Part Of The Surecell Atac Seq Library Prep Kit 17004620 Bio Rad, supplied by Bio-Rad, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/tn5 part of the surecell atac seq library prep kit 17004620 bio rad/product/Bio-Rad
Average 95 stars, based on 1 article reviews
tn5 part of the surecell atac seq library prep kit 17004620 bio rad - by Bioz Stars, 2026-04
95/100 stars
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surecell ddseq index kit  (Bio-Rad)
93
Bio-Rad surecell ddseq index kit
( a ) Schematic of the library preparation workflows for PseuMO-Tag–integrated scRNA-seq (top) and scATAC-seq (bottom). scRNA-seq workflow follows the Chromium platform (10x Genomics) and incorporates shPseuMO-Tag transcripts into messenger RNA libraries. The scATAC-seq workflow is based on the <t>ddSEQ</t> platform (Bio-Rad) and enables the integration of shPseuMO-Tag barcodes into chromatin accessibility libraries for clonal tracking. ( b ) Read structures of scRNA-seq and scATAC-seq libraries generated using the PseuMO-Tag system, highlighting barcode positioning and sequencing configurations. ( c ) Schematic of the PseuMO-Tag Decoder pipeline for scRNA-seq and scATAC-seq data. Amplicon-seq reads generated from the respective libraries were processed to associate single-cell barcodes with clonal barcodes (PseuMO-Tags). The resulting matrices link each cell to its clonal identity through either reference-based or reference-free assignment, enabling downstream analyses.
Surecell Ddseq Index Kit, supplied by Bio-Rad, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/surecell ddseq index kit/product/Bio-Rad
Average 93 stars, based on 1 article reviews
surecell ddseq index kit - by Bioz Stars, 2026-04
93/100 stars
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surecell atac seq platform  (Bio-Rad)
93
Bio-Rad surecell atac seq platform
Profiling chromatin accessibility of germline stem cells (GSCs) after retinoic acid (RA) treatment. ( a ) Schematic of experimental design. The workflow of sample collection after RA treatment and scATAC-seq to measure single nuclei accessibility on the BioRad <t>SureCell</t> <t>ATAC-Seq</t> platform. ( b ) Violin plot of TSS enrichment scores. ( c ) Ridge plot of number of unique fragments. ( d ) Pairwise comparison of gene scores between CTRL and RA-treated samples. The volcano plots show the differential gene score against the − log10(P value) of all investigated genes; each dot represents one gene. Red dots indicate the genes with FDR < 0.05 and log2FC > 0.1 or < -0.1. ( e ) Ridge plots of gene activity of SSC self-renewal and differentiation genes in GSCs with (blue) and without (red) RA treatment.
Surecell Atac Seq Platform, supplied by Bio-Rad, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/surecell atac seq platform/product/Bio-Rad
Average 93 stars, based on 1 article reviews
surecell atac seq platform - by Bioz Stars, 2026-04
93/100 stars
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surecell scatac seq procedure  (Bio-Rad)
92
Bio-Rad surecell scatac seq procedure
Profiling chromatin accessibility of germline stem cells (GSCs) after retinoic acid (RA) treatment. ( a ) Schematic of experimental design. The workflow of sample collection after RA treatment and scATAC-seq to measure single nuclei accessibility on the BioRad <t>SureCell</t> <t>ATAC-Seq</t> platform. ( b ) Violin plot of TSS enrichment scores. ( c ) Ridge plot of number of unique fragments. ( d ) Pairwise comparison of gene scores between CTRL and RA-treated samples. The volcano plots show the differential gene score against the − log10(P value) of all investigated genes; each dot represents one gene. Red dots indicate the genes with FDR < 0.05 and log2FC > 0.1 or < -0.1. ( e ) Ridge plots of gene activity of SSC self-renewal and differentiation genes in GSCs with (blue) and without (red) RA treatment.
Surecell Scatac Seq Procedure, supplied by Bio-Rad, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/surecell scatac seq procedure/product/Bio-Rad
Average 92 stars, based on 1 article reviews
surecell scatac seq procedure - by Bioz Stars, 2026-04
92/100 stars
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atac-seq kit  (Active Motif)
90
Active Motif atac-seq kit
Profiling chromatin accessibility of germline stem cells (GSCs) after retinoic acid (RA) treatment. ( a ) Schematic of experimental design. The workflow of sample collection after RA treatment and scATAC-seq to measure single nuclei accessibility on the BioRad <t>SureCell</t> <t>ATAC-Seq</t> platform. ( b ) Violin plot of TSS enrichment scores. ( c ) Ridge plot of number of unique fragments. ( d ) Pairwise comparison of gene scores between CTRL and RA-treated samples. The volcano plots show the differential gene score against the − log10(P value) of all investigated genes; each dot represents one gene. Red dots indicate the genes with FDR < 0.05 and log2FC > 0.1 or < -0.1. ( e ) Ridge plots of gene activity of SSC self-renewal and differentiation genes in GSCs with (blue) and without (red) RA treatment.
Atac Seq Kit, supplied by Active Motif, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/atac-seq kit/product/Active Motif
Average 90 stars, based on 1 article reviews
atac-seq kit - by Bioz Stars, 2026-04
90/100 stars
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assay for transposase-accessible chromatin with sequencing (atac-seq) analysis  (Active Motif)
90
Active Motif assay for transposase-accessible chromatin with sequencing (atac-seq) analysis
Profiling chromatin accessibility of germline stem cells (GSCs) after retinoic acid (RA) treatment. ( a ) Schematic of experimental design. The workflow of sample collection after RA treatment and scATAC-seq to measure single nuclei accessibility on the BioRad <t>SureCell</t> <t>ATAC-Seq</t> platform. ( b ) Violin plot of TSS enrichment scores. ( c ) Ridge plot of number of unique fragments. ( d ) Pairwise comparison of gene scores between CTRL and RA-treated samples. The volcano plots show the differential gene score against the − log10(P value) of all investigated genes; each dot represents one gene. Red dots indicate the genes with FDR < 0.05 and log2FC > 0.1 or < -0.1. ( e ) Ridge plots of gene activity of SSC self-renewal and differentiation genes in GSCs with (blue) and without (red) RA treatment.
Assay For Transposase Accessible Chromatin With Sequencing (Atac Seq) Analysis, supplied by Active Motif, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/assay for transposase-accessible chromatin with sequencing (atac-seq) analysis/product/Active Motif
Average 90 stars, based on 1 article reviews
assay for transposase-accessible chromatin with sequencing (atac-seq) analysis - by Bioz Stars, 2026-04
90/100 stars
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atac–seq profiling  (Active Motif)
90
Active Motif atac–seq profiling
Profiling chromatin accessibility of germline stem cells (GSCs) after retinoic acid (RA) treatment. ( a ) Schematic of experimental design. The workflow of sample collection after RA treatment and scATAC-seq to measure single nuclei accessibility on the BioRad <t>SureCell</t> <t>ATAC-Seq</t> platform. ( b ) Violin plot of TSS enrichment scores. ( c ) Ridge plot of number of unique fragments. ( d ) Pairwise comparison of gene scores between CTRL and RA-treated samples. The volcano plots show the differential gene score against the − log10(P value) of all investigated genes; each dot represents one gene. Red dots indicate the genes with FDR < 0.05 and log2FC > 0.1 or < -0.1. ( e ) Ridge plots of gene activity of SSC self-renewal and differentiation genes in GSCs with (blue) and without (red) RA treatment.
Atac–Seq Profiling, supplied by Active Motif, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/atac–seq profiling/product/Active Motif
Average 90 stars, based on 1 article reviews
atac–seq profiling - by Bioz Stars, 2026-04
90/100 stars
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atac-seq libraries  (Illumina Inc)
90
Illumina Inc atac-seq libraries
Profiling chromatin accessibility of germline stem cells (GSCs) after retinoic acid (RA) treatment. ( a ) Schematic of experimental design. The workflow of sample collection after RA treatment and scATAC-seq to measure single nuclei accessibility on the BioRad <t>SureCell</t> <t>ATAC-Seq</t> platform. ( b ) Violin plot of TSS enrichment scores. ( c ) Ridge plot of number of unique fragments. ( d ) Pairwise comparison of gene scores between CTRL and RA-treated samples. The volcano plots show the differential gene score against the − log10(P value) of all investigated genes; each dot represents one gene. Red dots indicate the genes with FDR < 0.05 and log2FC > 0.1 or < -0.1. ( e ) Ridge plots of gene activity of SSC self-renewal and differentiation genes in GSCs with (blue) and without (red) RA treatment.
Atac Seq Libraries, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/atac-seq libraries/product/Illumina Inc
Average 90 stars, based on 1 article reviews
atac-seq libraries - by Bioz Stars, 2026-04
90/100 stars
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atac-seq  (Epigenomics ag)
90
Epigenomics ag atac-seq
Profiling chromatin accessibility of germline stem cells (GSCs) after retinoic acid (RA) treatment. ( a ) Schematic of experimental design. The workflow of sample collection after RA treatment and scATAC-seq to measure single nuclei accessibility on the BioRad <t>SureCell</t> <t>ATAC-Seq</t> platform. ( b ) Violin plot of TSS enrichment scores. ( c ) Ridge plot of number of unique fragments. ( d ) Pairwise comparison of gene scores between CTRL and RA-treated samples. The volcano plots show the differential gene score against the − log10(P value) of all investigated genes; each dot represents one gene. Red dots indicate the genes with FDR < 0.05 and log2FC > 0.1 or < -0.1. ( e ) Ridge plots of gene activity of SSC self-renewal and differentiation genes in GSCs with (blue) and without (red) RA treatment.
Atac Seq, supplied by Epigenomics ag, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/atac-seq/product/Epigenomics ag
Average 90 stars, based on 1 article reviews
atac-seq - by Bioz Stars, 2026-04
90/100 stars
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atac-seq peak reference data in human pbmcs  (10X Genomics)
90
10X Genomics atac-seq peak reference data in human pbmcs
Profiling chromatin accessibility of germline stem cells (GSCs) after retinoic acid (RA) treatment. ( a ) Schematic of experimental design. The workflow of sample collection after RA treatment and scATAC-seq to measure single nuclei accessibility on the BioRad <t>SureCell</t> <t>ATAC-Seq</t> platform. ( b ) Violin plot of TSS enrichment scores. ( c ) Ridge plot of number of unique fragments. ( d ) Pairwise comparison of gene scores between CTRL and RA-treated samples. The volcano plots show the differential gene score against the − log10(P value) of all investigated genes; each dot represents one gene. Red dots indicate the genes with FDR < 0.05 and log2FC > 0.1 or < -0.1. ( e ) Ridge plots of gene activity of SSC self-renewal and differentiation genes in GSCs with (blue) and without (red) RA treatment.
Atac Seq Peak Reference Data In Human Pbmcs, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/atac-seq peak reference data in human pbmcs/product/10X Genomics
Average 90 stars, based on 1 article reviews
atac-seq peak reference data in human pbmcs - by Bioz Stars, 2026-04
90/100 stars
  Buy from Supplier
atac libraries sequenced on an illumina novaseq 6000  (Illumina Inc)
90
Illumina Inc atac libraries sequenced on an illumina novaseq 6000
Profiling chromatin accessibility of germline stem cells (GSCs) after retinoic acid (RA) treatment. ( a ) Schematic of experimental design. The workflow of sample collection after RA treatment and scATAC-seq to measure single nuclei accessibility on the BioRad <t>SureCell</t> <t>ATAC-Seq</t> platform. ( b ) Violin plot of TSS enrichment scores. ( c ) Ridge plot of number of unique fragments. ( d ) Pairwise comparison of gene scores between CTRL and RA-treated samples. The volcano plots show the differential gene score against the − log10(P value) of all investigated genes; each dot represents one gene. Red dots indicate the genes with FDR < 0.05 and log2FC > 0.1 or < -0.1. ( e ) Ridge plots of gene activity of SSC self-renewal and differentiation genes in GSCs with (blue) and without (red) RA treatment.
Atac Libraries Sequenced On An Illumina Novaseq 6000, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/atac libraries sequenced on an illumina novaseq 6000/product/Illumina Inc
Average 90 stars, based on 1 article reviews
atac libraries sequenced on an illumina novaseq 6000 - by Bioz Stars, 2026-04
90/100 stars
  Buy from Supplier

Image Search Results


( a ) Schematic of the library preparation workflows for PseuMO-Tag–integrated scRNA-seq (top) and scATAC-seq (bottom). scRNA-seq workflow follows the Chromium platform (10x Genomics) and incorporates shPseuMO-Tag transcripts into messenger RNA libraries. The scATAC-seq workflow is based on the ddSEQ platform (Bio-Rad) and enables the integration of shPseuMO-Tag barcodes into chromatin accessibility libraries for clonal tracking. ( b ) Read structures of scRNA-seq and scATAC-seq libraries generated using the PseuMO-Tag system, highlighting barcode positioning and sequencing configurations. ( c ) Schematic of the PseuMO-Tag Decoder pipeline for scRNA-seq and scATAC-seq data. Amplicon-seq reads generated from the respective libraries were processed to associate single-cell barcodes with clonal barcodes (PseuMO-Tags). The resulting matrices link each cell to its clonal identity through either reference-based or reference-free assignment, enabling downstream analyses.

Journal: bioRxiv

Article Title: Clonal lineage tracing and parallel multiomics profiling reveal transcriptional diversification induced by ARID1A deficiency

doi: 10.1101/2025.05.24.655549

Figure Lengend Snippet: ( a ) Schematic of the library preparation workflows for PseuMO-Tag–integrated scRNA-seq (top) and scATAC-seq (bottom). scRNA-seq workflow follows the Chromium platform (10x Genomics) and incorporates shPseuMO-Tag transcripts into messenger RNA libraries. The scATAC-seq workflow is based on the ddSEQ platform (Bio-Rad) and enables the integration of shPseuMO-Tag barcodes into chromatin accessibility libraries for clonal tracking. ( b ) Read structures of scRNA-seq and scATAC-seq libraries generated using the PseuMO-Tag system, highlighting barcode positioning and sequencing configurations. ( c ) Schematic of the PseuMO-Tag Decoder pipeline for scRNA-seq and scATAC-seq data. Amplicon-seq reads generated from the respective libraries were processed to associate single-cell barcodes with clonal barcodes (PseuMO-Tags). The resulting matrices link each cell to its clonal identity through either reference-based or reference-free assignment, enabling downstream analyses.

Article Snippet: Single-cell ATAC-seq libraries were generated using the SureCell ATAC-Seq Library Prep Kit and SureCell ddSEQ Index Kit (Bio-Rad) based on the manufacturer’s instructions.

Techniques: Generated, Sequencing, Amplification

Profiling chromatin accessibility of germline stem cells (GSCs) after retinoic acid (RA) treatment. ( a ) Schematic of experimental design. The workflow of sample collection after RA treatment and scATAC-seq to measure single nuclei accessibility on the BioRad SureCell ATAC-Seq platform. ( b ) Violin plot of TSS enrichment scores. ( c ) Ridge plot of number of unique fragments. ( d ) Pairwise comparison of gene scores between CTRL and RA-treated samples. The volcano plots show the differential gene score against the − log10(P value) of all investigated genes; each dot represents one gene. Red dots indicate the genes with FDR < 0.05 and log2FC > 0.1 or < -0.1. ( e ) Ridge plots of gene activity of SSC self-renewal and differentiation genes in GSCs with (blue) and without (red) RA treatment.

Journal: Scientific Reports

Article Title: scATAC-Seq reveals heterogeneity associated with spermatogonial differentiation in cultured male germline stem cells

doi: 10.1038/s41598-022-25729-7

Figure Lengend Snippet: Profiling chromatin accessibility of germline stem cells (GSCs) after retinoic acid (RA) treatment. ( a ) Schematic of experimental design. The workflow of sample collection after RA treatment and scATAC-seq to measure single nuclei accessibility on the BioRad SureCell ATAC-Seq platform. ( b ) Violin plot of TSS enrichment scores. ( c ) Ridge plot of number of unique fragments. ( d ) Pairwise comparison of gene scores between CTRL and RA-treated samples. The volcano plots show the differential gene score against the − log10(P value) of all investigated genes; each dot represents one gene. Red dots indicate the genes with FDR < 0.05 and log2FC > 0.1 or < -0.1. ( e ) Ridge plots of gene activity of SSC self-renewal and differentiation genes in GSCs with (blue) and without (red) RA treatment.

Article Snippet: The workflow of sample collection after RA treatment and scATAC-seq to measure single nuclei accessibility on the BioRad SureCell ATAC-Seq platform. ( b ) Violin plot of TSS enrichment scores. ( c ) Ridge plot of number of unique fragments. ( d ) Pairwise comparison of gene scores between CTRL and RA-treated samples.

Techniques: Activity Assay