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Image Search Results
Journal: bioRxiv
Article Title: Cytoplasmic mRNA capping enzyme is regulated by hypoxia inducible factor HIF1α and controls stability of the target lncRNAs during hypoxia
doi: 10.1101/2024.07.05.602207
Figure Lengend Snippet: A. Biochemical fractionation of normoxic/hypoxic U2OS cells into nuclear/ cytoplasmic fractions. The quality of fractionation was assessed by immunoblotting of nuclear marker Lamin A/C) and cytoplasmic marker (GAPDH). CA9 immunoblotting was done to confirm the hypoxic condition. B. Realtime PCR of cCE-targeted lncRNAs shows differential expression patterns in cytoplasmic extracts of hypoxic osteosarcoma cells. Hypoxia significantly elevates the expression of ASH1L-AS1, GAS5-215, ENTPD3-AS1, and H19-009, whereas NFYC-AS1 expression was significantly reduced. Two-tail Student’s t-test was performed for statistical analysis C. Schematic representation of the dominant negative form of cytoplasmic restricted capping inhibited construct (K294A) BIO and myc denote the biotinylation and myc tag respectively. The nuclear export sequence (NES) of HIV is inserted in the N-terminus and the Nuclear Localization Signal (NLS) from the C-terminus is deleted to restrict expression of CE only in the cytoplasm. The lysine (K) residue at 294 th position is mutated to alanine (A) to make the construct catalytically inactive. D. Immunofluorescence image of myc tagged K294A expressing cells. E. Nuclear and cytoplasmic fractionation of U2OS cells expressing ±K294A under normoxic/hypoxic conditions. Western blot of Myc and CA9 confirm K294A expression and hypoxic condition respectively. The quality of fractionation was further substantiated by western blotting of nuclear marker (Lamin A/C) and cytoplasmic marker (GAPDH). F. The steady- state expression of GAS5-215, NFYC-AS1, and H19-009 was significantly decreased in K294A- expressing cells under normoxia. But ASH1L-AS1 was significantly increased and ENTPD3-AS1 did not show any significant change. G. The steady State expression of lncRNAs in hypoxic K294A cells. Only H19-009 showed significantly reduced expression in hypoxic K294A cells. Statistical significance was calculated by Two-tail Student’s t-test. Values are represented as ± SD from three biological replicates. ns, P: non-significant, *P< 0.05, **P< 0.005, ***P< 0.0005, ****P< 0.0001; n≥3.
Article Snippet: The dilutions are as follows 1:1000 rabbit anti-HIF1α (Cell Signaling Technology, cat no# 36169); 1:1000 mouse anti-beta actin (Santa Cruz Biotechnology, cat no# SC-517582), 1:1000 rabbit anti-CE (Novus Biologicals, cat no# NPB1- 49973); 1:2000 mouse anti-GAPDH (Novus Biologicals, cat#2D4A7); 1:2000
Techniques: Fractionation, Western Blot, Marker, Expressing, Dominant Negative Mutation, Construct, Sequencing, Residue, Immunofluorescence