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clinical case origin host geographical location reference 16s rrna sequencing multiplexpcr maldi tof ms species identity  (ATCC)
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ATCC clinical case origin host geographical location reference 16s rrna sequencing multiplexpcr maldi tof ms species identity
Figure 1. Phylogenetic tree based on <t>16S</t> <t>rRNA</t> gene sequences showing the phylogenetic positions of Brazilian isolates (in black) among the four Flavobacterium species reported by LaFrentz et al. [10] (F. oreochromis in red, F. columnare in blue, F. covae in green, and F. davisii in yellow) and other Flavobac- teriaceae isolates (in purple). Relatedness was inferred using the maximum likelihood method based upon the General Time-Reversible model [GTR + G + I; 50] and rooted with Capnocytophaga ochracea ATCC 27872T. The percentage of trees in which the associated sequences clustered together in the bootstrap test (1000 replicates) is shown next to the main branches. The analysis involved 58 nucleotide sequences, all positions containing gaps and missing data were eliminated, and there was a total of 1255 positions in the final dataset.
Clinical Case Origin Host Geographical Location Reference 16s Rrna Sequencing Multiplexpcr Maldi Tof Ms Species Identity, supplied by ATCC, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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clinical case origin host geographical location reference 16s rrna sequencing multiplexpcr maldi tof ms species identity - by Bioz Stars, 2026-09
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target host species reference  (Cell Signaling Technology Inc)
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Cell Signaling Technology Inc target host species reference
Figure 1. Phylogenetic tree based on <t>16S</t> <t>rRNA</t> gene sequences showing the phylogenetic positions of Brazilian isolates (in black) among the four Flavobacterium species reported by LaFrentz et al. [10] (F. oreochromis in red, F. columnare in blue, F. covae in green, and F. davisii in yellow) and other Flavobac- teriaceae isolates (in purple). Relatedness was inferred using the maximum likelihood method based upon the General Time-Reversible model [GTR + G + I; 50] and rooted with Capnocytophaga ochracea ATCC 27872T. The percentage of trees in which the associated sequences clustered together in the bootstrap test (1000 replicates) is shown next to the main branches. The analysis involved 58 nucleotide sequences, all positions containing gaps and missing data were eliminated, and there was a total of 1255 positions in the final dataset.
Target Host Species Reference, supplied by Cell Signaling Technology Inc, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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target host species reference - by Bioz Stars, 2026-09
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antibody reference host species  (R&D Systems)
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R&D Systems antibody reference host species
Figure 1. Phylogenetic tree based on <t>16S</t> <t>rRNA</t> gene sequences showing the phylogenetic positions of Brazilian isolates (in black) among the four Flavobacterium species reported by LaFrentz et al. [10] (F. oreochromis in red, F. columnare in blue, F. covae in green, and F. davisii in yellow) and other Flavobac- teriaceae isolates (in purple). Relatedness was inferred using the maximum likelihood method based upon the General Time-Reversible model [GTR + G + I; 50] and rooted with Capnocytophaga ochracea ATCC 27872T. The percentage of trees in which the associated sequences clustered together in the bootstrap test (1000 replicates) is shown next to the main branches. The analysis involved 58 nucleotide sequences, all positions containing gaps and missing data were eliminated, and there was a total of 1255 positions in the final dataset.
Antibody Reference Host Species, supplied by R&D Systems, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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mice antigen host species distributor reference  (Bio-Rad)
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Bio-Rad mice antigen host species distributor reference
Figure 1. Phylogenetic tree based on <t>16S</t> <t>rRNA</t> gene sequences showing the phylogenetic positions of Brazilian isolates (in black) among the four Flavobacterium species reported by LaFrentz et al. [10] (F. oreochromis in red, F. columnare in blue, F. covae in green, and F. davisii in yellow) and other Flavobac- teriaceae isolates (in purple). Relatedness was inferred using the maximum likelihood method based upon the General Time-Reversible model [GTR + G + I; 50] and rooted with Capnocytophaga ochracea ATCC 27872T. The percentage of trees in which the associated sequences clustered together in the bootstrap test (1000 replicates) is shown next to the main branches. The analysis involved 58 nucleotide sequences, all positions containing gaps and missing data were eliminated, and there was a total of 1255 positions in the final dataset.
Mice Antigen Host Species Distributor Reference, supplied by Bio-Rad, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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reference strain escherichia coli jm83 cloning host 1 e coli bl21 de3 host  (ATCC)
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ATCC reference strain escherichia coli jm83 cloning host 1 e coli bl21 de3 host
Figure 1. Phylogenetic tree based on <t>16S</t> <t>rRNA</t> gene sequences showing the phylogenetic positions of Brazilian isolates (in black) among the four Flavobacterium species reported by LaFrentz et al. [10] (F. oreochromis in red, F. columnare in blue, F. covae in green, and F. davisii in yellow) and other Flavobac- teriaceae isolates (in purple). Relatedness was inferred using the maximum likelihood method based upon the General Time-Reversible model [GTR + G + I; 50] and rooted with Capnocytophaga ochracea ATCC 27872T. The percentage of trees in which the associated sequences clustered together in the bootstrap test (1000 replicates) is shown next to the main branches. The analysis involved 58 nucleotide sequences, all positions containing gaps and missing data were eliminated, and there was a total of 1255 positions in the final dataset.
Reference Strain Escherichia Coli Jm83 Cloning Host 1 E Coli Bl21 De3 Host, supplied by ATCC, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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antibody reference host species  (Cell Signaling Technology Inc)
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Cell Signaling Technology Inc antibody reference host species
Figure 1. Phylogenetic tree based on <t>16S</t> <t>rRNA</t> gene sequences showing the phylogenetic positions of Brazilian isolates (in black) among the four Flavobacterium species reported by LaFrentz et al. [10] (F. oreochromis in red, F. columnare in blue, F. covae in green, and F. davisii in yellow) and other Flavobac- teriaceae isolates (in purple). Relatedness was inferred using the maximum likelihood method based upon the General Time-Reversible model [GTR + G + I; 50] and rooted with Capnocytophaga ochracea ATCC 27872T. The percentage of trees in which the associated sequences clustered together in the bootstrap test (1000 replicates) is shown next to the main branches. The analysis involved 58 nucleotide sequences, all positions containing gaps and missing data were eliminated, and there was a total of 1255 positions in the final dataset.
Antibody Reference Host Species, supplied by Cell Signaling Technology Inc, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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ca 15–3 from human host (reference mbs536585)  (MyBiosource Biotechnology)
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MyBiosource Biotechnology ca 15–3 from human host (reference mbs536585)
Figure 1. Phylogenetic tree based on <t>16S</t> <t>rRNA</t> gene sequences showing the phylogenetic positions of Brazilian isolates (in black) among the four Flavobacterium species reported by LaFrentz et al. [10] (F. oreochromis in red, F. columnare in blue, F. covae in green, and F. davisii in yellow) and other Flavobac- teriaceae isolates (in purple). Relatedness was inferred using the maximum likelihood method based upon the General Time-Reversible model [GTR + G + I; 50] and rooted with Capnocytophaga ochracea ATCC 27872T. The percentage of trees in which the associated sequences clustered together in the bootstrap test (1000 replicates) is shown next to the main branches. The analysis involved 58 nucleotide sequences, all positions containing gaps and missing data were eliminated, and there was a total of 1255 positions in the final dataset.
Ca 15–3 From Human Host (Reference Mbs536585), supplied by MyBiosource Biotechnology, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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target host species reference  (Cusabio)
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Cusabio target host species reference
Figure 1. Phylogenetic tree based on <t>16S</t> <t>rRNA</t> gene sequences showing the phylogenetic positions of Brazilian isolates (in black) among the four Flavobacterium species reported by LaFrentz et al. [10] (F. oreochromis in red, F. columnare in blue, F. covae in green, and F. davisii in yellow) and other Flavobac- teriaceae isolates (in purple). Relatedness was inferred using the maximum likelihood method based upon the General Time-Reversible model [GTR + G + I; 50] and rooted with Capnocytophaga ochracea ATCC 27872T. The percentage of trees in which the associated sequences clustered together in the bootstrap test (1000 replicates) is shown next to the main branches. The analysis involved 58 nucleotide sequences, all positions containing gaps and missing data were eliminated, and there was a total of 1255 positions in the final dataset.
Target Host Species Reference, supplied by Cusabio, used in various techniques. Bioz Stars score: 92/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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combined phix and host reference genome database  (Illumina Inc)
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Illumina Inc combined phix and host reference genome database
Figure 1. Phylogenetic tree based on <t>16S</t> <t>rRNA</t> gene sequences showing the phylogenetic positions of Brazilian isolates (in black) among the four Flavobacterium species reported by LaFrentz et al. [10] (F. oreochromis in red, F. columnare in blue, F. covae in green, and F. davisii in yellow) and other Flavobac- teriaceae isolates (in purple). Relatedness was inferred using the maximum likelihood method based upon the General Time-Reversible model [GTR + G + I; 50] and rooted with Capnocytophaga ochracea ATCC 27872T. The percentage of trees in which the associated sequences clustered together in the bootstrap test (1000 replicates) is shown next to the main branches. The analysis involved 58 nucleotide sequences, all positions containing gaps and missing data were eliminated, and there was a total of 1255 positions in the final dataset.
Combined Phix And Host Reference Genome Database, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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reference host  (ATCC)
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ATCC reference host
Figure 1. Phylogenetic tree based on <t>16S</t> <t>rRNA</t> gene sequences showing the phylogenetic positions of Brazilian isolates (in black) among the four Flavobacterium species reported by LaFrentz et al. [10] (F. oreochromis in red, F. columnare in blue, F. covae in green, and F. davisii in yellow) and other Flavobac- teriaceae isolates (in purple). Relatedness was inferred using the maximum likelihood method based upon the General Time-Reversible model [GTR + G + I; 50] and rooted with Capnocytophaga ochracea ATCC 27872T. The percentage of trees in which the associated sequences clustered together in the bootstrap test (1000 replicates) is shown next to the main branches. The analysis involved 58 nucleotide sequences, all positions containing gaps and missing data were eliminated, and there was a total of 1255 positions in the final dataset.
Reference Host, supplied by ATCC, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


Figure 1. Phylogenetic tree based on 16S rRNA gene sequences showing the phylogenetic positions of Brazilian isolates (in black) among the four Flavobacterium species reported by LaFrentz et al. [10] (F. oreochromis in red, F. columnare in blue, F. covae in green, and F. davisii in yellow) and other Flavobac- teriaceae isolates (in purple). Relatedness was inferred using the maximum likelihood method based upon the General Time-Reversible model [GTR + G + I; 50] and rooted with Capnocytophaga ochracea ATCC 27872T. The percentage of trees in which the associated sequences clustered together in the bootstrap test (1000 replicates) is shown next to the main branches. The analysis involved 58 nucleotide sequences, all positions containing gaps and missing data were eliminated, and there was a total of 1255 positions in the final dataset.

Journal: Pathogens (Basel, Switzerland)

Article Title: Identification and Phylogenetic Analysis of Flavobacterium spp. Associated with Aquaculture Fish Diseased from Brazil.

doi: 10.3390/pathogens14030219

Figure Lengend Snippet: Figure 1. Phylogenetic tree based on 16S rRNA gene sequences showing the phylogenetic positions of Brazilian isolates (in black) among the four Flavobacterium species reported by LaFrentz et al. [10] (F. oreochromis in red, F. columnare in blue, F. covae in green, and F. davisii in yellow) and other Flavobac- teriaceae isolates (in purple). Relatedness was inferred using the maximum likelihood method based upon the General Time-Reversible model [GTR + G + I; 50] and rooted with Capnocytophaga ochracea ATCC 27872T. The percentage of trees in which the associated sequences clustered together in the bootstrap test (1000 replicates) is shown next to the main branches. The analysis involved 58 nucleotide sequences, all positions containing gaps and missing data were eliminated, and there was a total of 1255 positions in the final dataset.

Article Snippet: \ Clinical Case Origin Host Geographical Location Reference 16S rRNA Sequencing MultiplexPCR MALDI-ToF MS Species Identity (%) Coverage (%) Species Before Custom MSP Inclusion † Organism Best Match After Custom MSP Inclusion Score Value † Score Value ATCC 23463 - USA Oncorynchus tshawytscha [28] F. columnare 99.93 f 100 F. columnare 1.441 F. columnare 2.057 ATCC 49512 - France Salmo truta [29] F. columnare 99.57 g 100 F. columnare 1.562 F. columnare 2.601 Lowercase letters indicate strains used for NCBI identities and their accession numbers: a TI2056 (KX711900.1); b AL-02-36 (MW353013.1); c C#2 (CP015107.1); d CUVET1215 (KF274040.1); e TI1690 (KX711899.1); f B185R (CP013012.1); g 2023717G (OR946449.1).

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