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Miltenyi Biotec
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Journal: Nature Communications
Article Title: Coiled-coil heterodimer-based recruitment of an exonuclease to CRISPR/Cas for enhanced gene editing
doi: 10.1038/s41467-022-31386-1
Figure Lengend Snippet: Schematic presentation of different parallel or anti-parallel coiled coil pairing. N5N6 (strong parallel CC pair), P3AP4 (anti-parallel CC pair) and P3SP4S (weak parallel CC pair) ( a ). Diagram showing gRNA positions within exon 2 of the human CD47 gene ( b ). Indel mutation quantification by the T7E1 assay, determined 48 h post transfection (HEK293 cells (2*10 5 cells/ml) were transfected with plasmids encoding gRNA and CCExo) for several tested gRNAs ( c – h ), a combination of all gRNAs ( i ), and gRNA1 in combination with CCExo containing coiled-coils with increasing affinity (P3P4 < N5N6) ( j ). Data present three individual separate experiments ( n = 3). * P < 0.05, **< 0.01, ***< 0.001 and **** P < 0.0001. All P values are from ordinary one-way ANOVA followed by Tukey’s multiple comparisons test compared to Cas9 values or if stated otherwise by brackets. Data are presented as mean values ± SEM as appropriate ( c – j ). Expression of Cas9 or its variants in HEK293 cells 48 h post transfection determined by western blot and immunodetection using specific anti-Cas9 antibodies. α-tubulin was used as a loading control. A representative blot from two individual separate experiment is shown ( k ).
Article Snippet: For
Techniques: Mutagenesis, Transfection, Expressing, Western Blot, Immunodetection
Journal: Nature Communications
Article Title: Coiled-coil heterodimer-based recruitment of an exonuclease to CRISPR/Cas for enhanced gene editing
doi: 10.1038/s41467-022-31386-1
Figure Lengend Snippet: HEK293 cells (2*10 5 cells/ml) were transfected with plasmids encoding target gRNA and CCExo. Genomic DNA was isolated 48 h post transfection, the targeted region PCR amplified and subjected to NGS analysis. NGS analysis was performed for 200 bp amplicons for gRNA targeting MYD88 gene ( a ) or 400 bp amplicons for gRNA targeting CD47 gene ( b ), VEGFα gene ( c ) or EMX1 gene ( d ). Diagrams are showing percentage (calculated based on number of total mutated reads) of deletions (Δ) of various lengths. Genome wide determinations of potential off-target activities of CCExo for VEGFα sites in HEK293 cells and for TRBC1 site in human K562 cells, predicted by CIRCLE-seq ( e ).
Article Snippet: For
Techniques: Transfection, Isolation, Amplification, Genome Wide